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    Resource Collection v3
    No images, no description
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    NIBLSE Learning Resource Collection
    Collection of bioinformatics hosted at NIBLSE
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    Lesson V - Phylogenetics
    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson V is an introduction to Phylogenetics.

    Keywords: Bioinformatics EducationBioinformatics and Genomics

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    DEHPD 17 Steps in the Hiring Process
    A 17 step document created by people from marginalized populations for equity and diversity in hiring.
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    ODD Description of the BEFORE Beech Forest Model
    This is a supplemental resource from ABM

    Keywords: case studytextbookNetLogoagent-based modelingODD protocol

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    Hidden Markov Model
    Hidden Markov models are a set of mathematical tools that can be used to draw inferences about genomic and evolutionary processes.

    Keywords: hidden markov models

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    Dynamic Programming
    In bioinformatics, dynamic programming is mainly used to align nucleotide and amino acid sequences, and to predict RNA and protein folding from primary sequence data.

    Keywords: RNAamino acid sequenceSequence alignmentdynamic programmingprotein folding

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    Deme 2.0
    This workbook simulates the population genetics of a single gene with two alleles. It can simultaneously model up to three local populations, which may differ in their selection coefficients.

    Keywords: population geneticsGenetic DriftNatural Selection

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    Biodiversity
    Biodiversity allows the diversity of a biological population to be estimated with both the Shannon and Simpson biodiversity indices based on information theory.

    Keywords: Shannon diversity indexSimpson diversity indexBiodiversity indicesInformation theory

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    Genome Solver: Complete Set of Lessons
    The Genome Solver Project began as a way to teach faculty some basic skills in bioinformatics - no coding or scripting. These Lessons also work well in the undergraduate classroom, culminating...

    Keywords: bioinformaticsNIBLSEBioinformatics EducationBioinformatics and GenomicsC4. Bioinformatics toolsC5. Data retrievalC6. ModelsC8. Data typesC9. ImplicationsRecommended by NIBLSE

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    Tutorial Combination and Online Implementation
    The two key features of my implementation is the fact that the tutorial was implemented in an online setting, and I added an assessment (also implemented in an online setting).

    Keywords: onlineScientific ProcessStatistics and MathScientific Methodology

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    Hemocytometer and Counting Cells Cell Block
    This resource describes how to count cells using a hemocytometer.

    Keywords: lab protocolcounting cells

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    Growing Lung Carcinoma and Lung Fibroblast Cell Lines
    Basic information on how to grow Lung Carcinoma and Lung Fibroblast Cell Lines.

    Keywords: tipsCell Growthcell cultureA-549HFL-1

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    How to Grow Specific Cell Lines: Liver Cancer Cell Lines (SNU-423 and Hep-G2)
    General information for growing cell lines. One is a high-grade (fast) cancer the other is a low-grade. Makes for great comparisons within a class setting.

    Keywords: tipsCell GrowthHepG2SNU-423 ATCC

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    MTT Assay Video Protocol
    This assay works great. However, the cells are killed during the course of the assay. If you want cells to remain alive use the Alamar Blue assay.

    Keywords: MTT Assay

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    Easy Hypoxia Treatments for Cell Culture a CBEC Cell Block
    A combination of ideas we have found from various sources. These can be used in an undergraduate lab or Cell CURE.

    Keywords: hypoxia

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    Two-Species Model
    These two Excel worksheets simulate the population growth of two interacting species. In isolation, each species grows logistically, but interaction effects between species may limit or enhance...

    Keywords: population growthcompetition modelsLotka-Volterra

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    Serial Dilutions
    In this Excel workbook, users will enter the original cell concentration and the desired dilution factor (10, 100, and 1000). The program will then calculate the new cell concentration.

    Keywords: concentrationScientific Notationorders of magnitudeserial dilutions

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    Phylogeography Simulator
    This Excel workbook simulates the phylogeography of an asexually reproducing species.

    Keywords: Phylogeographymutation ratesAsexual reproductionspecies dispersal

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    Operon
    This Excel workbook models lac operon function in a partial diploid E. coli. The user chooses the bacterial genotype and the sugars present in the surrounding medium: the workbook then determines...

    Keywords: Lac OperonE. coli

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