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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Findings from spring 2021 EDSIN community member interviews
    During May and June 2021, CSCCE staff conducted nine 45-minute interviews with members of the EDSIN community with the goal of ascertaining perceptions about the community and its purpose, and...

    Keywords: EDSINEnvironmental Data Science Inclusion Network

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    Implementing an online module about interpreting sound in a coral reef for an undergraduate marine biology course in Indonesia
    Students engage in interpreting sound, exploring the diversity of sounds in a coral reef in Indonesia, and relating coral reefs to climate change. This implementation incorporated principles of...

    Keywords: fishcoral reefssoundscapestropical ocean

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    When tests disagree, how do I know if I have COVID-19?
    Students will learn about infectious disease and the immune response to infection by investigating different types of tests (PCR, antigen, and antibody tests) to detect the SARS-CoV-2 viral genetic...

    Keywords: geneticsVision and Changeintroductory biologyinfectious diseasemolecular biologycore competenciesRT-PCRviruscore conceptsnon-majors biologySARS-CoV-2antibodyAntigenImmunoReachmolecular DiagnosticsCOVID-19 transmission

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    1-081-TumorGrowth-ModelingScenario
    Students will transform, solve, and interpret a tumor growth scenario using non-linear differential equation models. Two population growth models (Gompertz and logistic) are applied to model tumor...

    Keywords: logisticpopulationtumorGompertz

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    A discussion of C-Path, regulation science, and recommended drug treatments with Nicholas King
    Nicholas King acts as the Scientific Program Manager for the Critical Path (C-Path) Institute’s Biomarker Program. He discusses the journey he has been on to arrive at his position, what the...

    Keywords: healthCollaborative researchdrug discovery

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    A collaborative approach to quantitative biology course reform: It's better than doing it all by yourself
    This is the abstract of an oral presentation given at the Society for Mathematical Biology Annual Meeting in Atlanta, GA in 2015.

    Keywords: Society for Mathematical Biology

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    The Power of Place: A Course-Based Undergraduate Research Experience Studying Urban Ecology, Local Apple Trees and Disease Susceptibility
    Course-based Undergraduate Research Experiences (CUREs) offered early in an undergraduate student’s career have the potential to include a greater number and diversity of students than...

    Keywords: Disease ecologyurban ecologyUrban food forestsUrban heat islandsGenetic resistance

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    An Introduction to agent-based modeling.
    Introductory level textbook based on a collection of lecture notes from an undergraduate course on agent-based modeling at Arizona State University.

    Keywords: textbookcurriculumNetLogoagent-based modelingIndividual & Agent Based Modelingcourseundergraduate educationResources @ QUBES - Teaching & Reference

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    2013-Brian_Winkel-An_Optimal_Control_Model_in_Insect_Colonies
    we find and develop background material on an application of optimal control theory to model the evolutionary strategy of an insect colony to produce the maximum number of queen or reproducer...

    Keywords: insect colonyoptimal controlparameter

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    5-022-ColdPill-ModelingScenario
    A model for the flow of a cold pill drug through the gastrointestinal compartment to the bloodstream compartment of a human subject is proposed. Students solve the system of differential equation...

    Keywords: ratesmedicinedrug discoverycompartmentcold pillgastrointestinalbloodstream

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    CyVerse: Scalable Image Informatics
    Poster on cyberinfrastructure for the machine learning ere presented at the 2020 BIOME Institute: Cultivating Scientific Curiosity

    Keywords: image analysisundergraduate researchmachine learningCyVerse

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    The BioTAP Professional Development Model: Expanding Empirical Research on Graduate Student Teaching Professional Development
    The Biology Teaching Assistant Project (BioTAP) provides a year-long mentoring program for practitioners and researchers of Biology Graduate Teaching Assistant Teaching Professional Development...

    Keywords: mentoringstemcommunityUndergraduateteaching professional developmentGraduate Teaching AssistantConfidence in Research Skills

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    Sustainability and Justice: Challenges and Opportunities for an Open STEM Education
    Combining understanding of OER sustainability and equity and justice to carve out ideas for the future of STEM open education.

    Keywords: sustainabilityOERsocial justicenonprofitdigital library

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    Faculty professional development in quantitative biology promotes scholarly teaching
    Poster presented at NABT 2017 in St. Louis, Missouri

    Keywords: professional developmentNABTResources @ QUBES - Teaching & Reference

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    Biodiversity Show and Tell: An Accessible Activity to Encourage Students to Explore the Tree of Life
    An appreciation of organismal diversity is a requirement for understanding evolution and ecology, and can serve as a source of amazement and wonder that inspires students to enjoy biology. However,...

    Keywords: EvolutionecologyBiodiversity

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    Earth Analytics in Python Course
    Earth analytics is an intermediate, multidisciplinary course that addresses major questions in Earth science and teaches students to use the analytical tools necessary to undertake exploration of...

    Keywords: data analysisdatadata typesdata scienceearth sciencepythonpermafrostremote sensingfloodsGeographic Information System (GIS)data science educationcomputer programmingwildfireearth analytics

    1944

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    Earth Analytics in R Course
    Earth analytics is an advanced, multidisciplinary course that addresses major questions in Earth science and teaches students to use the analytical tools necessary to undertake exploration of...

    Keywords: data analysisdatadata typesdata visualizationdata scienceearth scienceR programming languageremote sensingGeographic Information System (GIS)data science educationcomputer programmingwildfireearth analytics

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    Earth Analytics Bootcamp Course
    The Earth Analytics Bootcamp is a three-week introductory-level course taught by instructors in Earth Lab and is a part of the Professional Certificate in Earth Data Analytics - Foundations at CU...

    Keywords: data analysisdatadata typesdata visualizationdata scienceearth sciencepythonremote sensingGeographic Information System (GIS)data science educationdcomputer programmingwildfireearth analytics

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    BEDE Network Data Science Skills Curriculum Map
    The Biological and Environmental Data Education (BEDE) Network has produced this data science skills curriculum map as a flexible tool to help instructors highlight data science skills that they...

    Keywords: quantitative skillsscientific literacyCurriculum developmentdata science skills trainingdata literacy skills

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    A CURE-based approach to teaching genomics using mitochondrial genomes
    There is an abundance (currently over 1016 DNA bases) of publicly available genetic sequence data and a dearth of trained genomicists to process and interpret it, necessitating more trained...

    Keywords: proteinsMitochondrial GenomesNuclear GenomesrRNAtRNA

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