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Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    2008-Huangi-Lu-Modeling long-term longitudinal HIV dynamics with applications to an AIDS clinical study 
    To better understand the factors responsible for the virological failure, this paper develops the mechanism-based nonlinear differential equation models for characterizing long-term viral dynamics...

    Keywords: longitudinal dataAIDSantiretroviral drug therapyBayesian nonlinear mixed-effectstime-varying drug efficacyHIV dynamics

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    1992-Emelie_Kenney-Differential equations and the AIDS epidemic
    This paper describes a lecture for Calculus II students in which the Acquired Immune Deficiency Syndrome was used to motivate study of first-order linear differential equations and the derivative...

    Keywords: epidemicCDCAIDSDisease Control

    158

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    1992-Emelie_Kenney-Differential_equations_and_the_AIDS_epidemic
    This paper describes a lecture for Calculus II students in which the Acquired Immune Deficiency Syndrome was used to motivate study of first-order linear differential equations and the derivative...

    Keywords: datafirst orderparameterAIDS

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    Targeting Infected Cells for Immune Defense
    This animation shows how a cell infected by a virus signals cytotoxic T cells to destroy itself.

    Keywords: Resources @ HHMI - BioInteractiveimmune systemAnatomy & PhysiologyCell communication

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    Mock Drug Activity Enhances Student Learning About the Challenges of HIV/AIDS Therapy
    While traditional didactic coursework is important for learning about the scientific aspects of HIV/AIDS, it is difficult to convey social aspects of the epidemic. Due to effective drug therapies,...

    Keywords: drug resistanceRetrovirusViral replication

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    The Morning After: A Case Study of the Impacts of HIV on Sexual Minority Populations
    Poster on a case study around the experiences of the LGBT community related to HIV presented at the 2018 QUBES/BioQUEST Summer Workshop

    Keywords: case studypublic healthHIVSummer Workshop 2018LGBT community

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    Democratizing Student Access to Help: the nationwide, virtual peer mentoring network of the Genomics Education Partnership
    Our data suggests that online delivery of the novel Virtual TA program allowed the GEP CURE to remain effective through the transition from onsite to online: the GEP CURE is resilient. This...

    Keywords: Genomics Education PartnershipNABT2023

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    2017-Fred_Adler-Mathematically Modeling Asthma
    Our Asthma models have examined how a viral infection can tip the immune system into a different state, with the potential to predispose an individual to future asthma

    Keywords: infectionasthmaimmune responserhinovirus

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    6-003-SchoolFluEpidemic-ModelingScenario
    We offer a model of the spread of flu in a school dormitory and are asked to find when the flu levels reach their peak and explain long term behavior of the spread of the flu.

    Keywords: infectionepidemicSIR modelflupeakschool children

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    Using Comics to Make Science Come Alive
    Students often see science as a fragmented set of facts to be memorized, rather than concepts and processes that are relevant in their everyday lives. This is especially true for non-science...

    Keywords: role of science in society

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    Measuring Crayfish Habitat Use and Selection
    Changes in crayfish populations within streams can indicate shifts in habitat preferences, which often reflect environmental conditions such as shelter availability and food resources. Variations...

    Keywords: Biodiversityenvironmental scienceconservation ecologywater quality and resource allocationfreshwater systemsfreshwater invertebrateshabitatRiver Field Studies NetworkCrayfishFreshwater crustaceansCrawfish

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    BEIC - Creation of the Biology Educator/Researcher Cross-Segment Collective (RCN-UBE Introduction)
    The Biology Education Intersegmental Collaborative aids faculty learning communities consisting of 2- and 4-year partners to improve community college and transfer student outcomes. BEIC supports...

    Keywords: RCN-UBE Introduction

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    Exploring Microbial Diversity: An Interactive In-Class Assignment for Biology and Microbiology Courses
    This interactive assignment engages students in a hands-on exploration of microbial diversity and the importance of microbes in ecosystems. Designed for General Biology II and Introduction to...

    Keywords: Microbiology EducationMicrobial DiversitymicrobiologyEcological Society of Americaecology educationresearch-based classroom instruction4DEE Framework

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    Exploring Functions for Common Phage Proteins
    This resource is designed to help students better understand the functions of common structural and enzymatic phage proteins, and to relate these functions to phage structure using electron...
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    Agent-Based Modeling Course Materials
    Materials created for an upper level ABM course. Prerequisite: Students have taken either (a) another modeling course, or (b) the introductory computer science sequence.

    Keywords: agent-based modelingindividual-based modelingcourse materials

    2001

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    The Comics Project: Synthesizing and Communicating Science with Comics
    Students, especially non-science majors, often see science as abstracted from their daily lives. Moreover, students often struggle to translate scientific concepts into everyday language in order...

    Keywords: communicating scienceScience & Societycomics

    879

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    Science and Society: Integrating Historical Science Materials Into an Undergraduate Biology Course
    Vision and Change in Undergraduate Biology Education (American Association for the Advancement of Science, 2011) stresses the importance of fostering an understanding of the relationship between...

    Keywords: infectious diseasevaccinationbacteriavirusesantibiotics

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    Biology from Molecules to Embryos, Interactive Animated Lessons
    Visualizing kinetic processes can be an impediment to student mastery of basic science coursework. To remedy this obstacle, I created an educational program called Biology from Molecules to...

    Keywords: geneticsBIOMEEmbryologycomputer assisted instructioneducational programeducational videosonline lessonsanimated lessonseducational website

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    A Kinesthetic and Collaborative Activity to Improve Conceptual Understanding of Chemical Equilibrium
    While teaching in large lecture halls, it is challenging even for experienced teachers to hold their students’ attention for the entire class period. Owing to the large enrollment in STEM...

    Keywords: collaborationdemonstrationchemistrykinesthetic learningequilibriumhands-on learning

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    Who’s That Speci-Mon? Using PokémonTM to Understand Biological Terminology Using Greek and Latin Roots
    We set out to create a fun and engaging activity using recognizable fictional characters, so students get a chance to practice using Greek and Latin roots to create binomial names. Students in...

    Keywords: linguisticstaxonomyAnatomyGreek and Latin Roots

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