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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    CourseSource 2.0: Finding high quality field-tested OERs, publishing evidence-based teaching activities, and promoting community collaborations.
    Workshop materials related to the CourseSource platform. Presented at the the 2021 BIOME Institute.

    Keywords: undergraduate biology educationCourseSourceopen educational resourceevidence-based teaching2021 BIOME

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    GEA Introductory lesson on RNA-Seq
    This RNA-Seq lesson uses the CyVerse VICE Platform and Jupyter notebooks to examine the expression of the leptin gene in samples from a mouse experimental design evaluating diet (high-fat vs....

    Keywords: data sciencebioinformaticsGenome BrowserRNAseqhigh throughput sequencingmRNAAlignmentNCBI Sequence Read Archive

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    NEON Data in the Classroom: Using the QUBES Platform and Faculty Mentoring Networks to Build, Adapt, and Publish Data­-Driven Teaching Resources
    The NEON FMN has been offered for three semesters with 37 faculty participating, resulted in a wide variety of new and adapted modules being publicly available.

    Keywords: NEON FMN

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    Citations
    Published Avida-Ed article

    Keywords: EvolutioncurriculumSelectionDigital Organisms

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    BioNumbers-the database of key numbers in molecular and cell biology
    BioNumbers is a database of key numbers in molecular and cell biology—the quantitative properties of biological systems of interest to computational, systems and molecular cell biologists

    Keywords: dataResources @ BioNumbersNumbersestimationdatabaseResources @ QUBES - Teaching & Reference

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    Links to Avida-ED spreadsheets for Active LENS and BioQUEST 2018
    Avida-ED materials and resources for Active LENS and BioQUEST 2018.

    Keywords: avida-edSummer Workshop 2018

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    Serenity now! Keep calm and do science with real data in the classroom
    Session on using real data in the classroom with Serenity, a platform-independent browser-based interface to data science tools for the classroom.

    Keywords: data scienceBIRDDtool:serenitySummer Workshop 2018Galapagos

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    Modifying HHMI Anole Resources: Using Image J to Quantify Ecomorphs and Tree-thinking to Explore Evolutionary Hypotheses
    I recombined the HHMI resources to have the students perform the image analysis from Virtual Lab 1 in Image J and explore the evolutionary principles in the Lizard Phenology modules

    Keywords: Evolutionorganismal biologytool:imagejSpeciationTree thinkingDNAphylogeny and classification

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    Developing Open Source Plugins for the Educational Gateway QUBEShub: Expanding Community Reach and Building a Robust Open Education Resource Ecosystem
    We present work on development of (1) a component to record, track and display the multitude of partners and professional organizations involved in the QUBES mission, and (2) a component to bring...

    Keywords: OERscience gatewaysgateways17

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    The Correlation Between SARS-CoV-2 RNA in Wastewater and Rising COVID-19 Vaccination Rates, in Los Angeles California
    The COVID-19 pandemic has undoubtedly impacted everyone around the globe. In 2020, many countries entered into a lockdown, transforming daily lifestyles into isolation. The SARS-CoV-2...

    Keywords: RNASARS-CoV-2wastewater

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    Conserving Water in a Time of Climate Change: What are the Benefits of Using Greywater on Household Gardens
    We were curious if there would be any simple way to decrease water use in communities because of the ongoing drought in California. To do this, we would use three different types of greywater,...

    Keywords: conservationclimate changewater resources

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    1-057-FiguringFluidFlow-ModelingScenario
    We propose three differential equations models for the height of a column of falling water as the water exits a small bore hole at the bottom of the cylinder and ask students to determine which...

    Keywords: dischargetankTorricelli's LawConservation of Energyfluid flowheightliquid

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    Comparative Landscape Ecology Project using RStudio Cloud (Project EDDIE)
    This modified version incorporates the use of RStudio Cloud for easier remote instruction, and culminates in an exploratory project comparing the influence of patch metrics on vegetation health for...
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    The Genomics Education Partnership: Introducing Undergraduates to Research by Engaging Them in Genome Annotation
    Since 2006, the Genomics Education Partnership (GEP; http://gep.wustl.edu) has helped faculty bring genomics research experiences into the undergraduate curriculum.

    Keywords: undergraduate researchGenome annotationGEPgenomics education

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    The QUBES Resource System: Integrating open educational practices into diverse education reform communities
    Presentation on the QUBES Resource System given at the 16th Annual Open Education Conference

    Keywords: QUBESOERQUBES Resources SystemOpenEd

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    Exploring how climate will impact plant-insect distributions and interactions using open data and informatics
    This teaching module provides an entry point for students to learn about data science, open data repositories (e.g., citizen science data), and species distribution modeling to study the effects of...

    Keywords: modelingcitizen sciencehypothesis testingdata scienceclimate changeR programming languageBiodiversityplant animal interactionsinquiry-based learningspecies distributionseco-informatics

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    Documenting teaching scholarship among undergraduate biology educators using OER
    Poster on the use, adaptation, and reuse of Open Educational Resources within the QUBES community at OpenEd 2018

    Keywords: QUBESadaptationfmnOpenEdteaching scholarship

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    OCELOTS - A Network for Facilitating Online Content for Experiential Learning of Tropical Systems (RCN-UBE Introduction)
    The OCELOTS Network connects tropical biology researchers with specialists in pedagogy, 4DEE, software, and media to create and implement research-based online modules in tropical biology,...

    Keywords: RCN-UBE Introduction

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    Honoring the Complexity of Genetics: Exploring the Role of Genes and the Environment Using Real World Examples
    Historically, undergraduate genetics courses have disproportionately focused on the impact of genes on phenotypes, rather than multifactorial concepts which consider how a combination of genes, the...

    Keywords: genesenvironmentMendelQuantitative traitsMultifactorialGene by environment interactions

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    Turning ecological research into engaging online modules for undergraduates through Gala/OCELOTS
    Learn how to create and implement online modules in tropical ecology for undergraduates. In an NSF-funded network, researchers and specialists in 4DEE, pedagogy, interactive data tools, and media...

    Keywords: tropical biologyOCELOTSLDC2023

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