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    2002-Nelson-Perelson-Mathematical analysis of delay differential equations models of HIV-1 infection
    We develop and analyze a set of models that include intracellular delays, combination antiretroviral therapy, and the dynamics of both infected and uninfected T cells.

    Keywords: infectionHIVT cells

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    Modeling: A Primer - The crafty art of making, exploring, extending, transforming, tweaking, bending, disassembling, questioning, and breaking models
    Explore how to use, analyze, and criticize some important and historically influential models in biology in this text only module.

    Keywords: modelingsimulationmoduleResources @ BioQUESTtextbookmodulesmathematical modeling

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    2017-Jean-Roux-Mathematical Models in Air Quality Problems
    Presents many models with analysis in air quality control. Starts with chemical kinetics models and builds complexity to PDE models.

    Keywords: air pollution effects on forest ecosystemsfinite volume methodboundary layerchemical kineticsfinite differenceemissionsdepositionsadvection

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    Learning with All Your Senses: Mathematical Manipulatives Enhance Student Comprehension of Biological Models
    Handout for a session presentation on kinesthetic learning at the 2019 BioQUEST & QUBES Summer Workshop

    Keywords: Models3D models3D printingmanipulativeskinesthetic learning

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    2013-Michael-Evans-Growth and Decay
    Sometimes, we can describe processes of growth and decay—whether physical, chemical, biological or sociological—by mathematical models.

    Keywords: exponential growthexponential decayisotopespopulationsresource depletion

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    2012-Brian_Ingalls-Mathematical_Modelling_in_Systems_Biology
    This text provides an introduction to dynamic mathematical modeling of cellular processes. The emphasis is on using computational tools to investigate models of cellular phenomena.

    Keywords: biologygene regulatory networksModelsmetabolic networkssignal transduction pathwayselectrophysiology

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    Discrete Math Modeling with Biological Applications (Course Materials)
    These are the materials for Math 214 offered at Rhodes College.

    Keywords: labsagent-based modelingDiscrete Difference Equationsmatrix modelscoursebiomath coursedemonstrationin-class activitylab protocolproblem set

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    2014-Enderling-Chaplain-Mathematical Modeling of Tumor Growth and Treatment
    Herein we describe fundamentals of mathematical modeling of tumor growth and tumor-host interactions, and summarize some of the seminal and most prominent approaches.

    Keywords: cancertumor modelingangiogenesistumor growthpatient care

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    2018-Meredith_Greer-Ella_Livesay-Mathematical Epidemiology Goes to College
    In this article we present models that were inspired by two real-life outbreaks at a small residential college campus: H1N1 influenza in 2009 and, surprisingly, mumps in 2016.

    Keywords: epidemiologydiseaseH1N1Influenzaoutbreak

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    2001-Cheng-Teaching mathematical modelling in Singapore schools
    The purpose of this paper is to examine the possibility of introducing the teaching of mathematical modelling to the secondary school curriculum in Singapore.

    Keywords: teachinglogisticsecondary school mathematicsBarnacle GeeseSingapore

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    2003-Knorrenschild-Gross-Text Books on Mathematical Modeling in Biology
    Text Books on Mathematical Modeling in Biology Compiled from the Internet by Michael Knorrenschild,

    Keywords: biologyMathematical Biologytextbooktext

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    Linear Models and Linear Mixed Effects in R: Tutorial 1
    The first of two tutorials that introduce you to linear and linear mixed models.

    Keywords: statisticsmathematicsRdata analysisconceptsstatsregressionmixed modelslinear modelsfixed effectsResources @ QUBES - Teaching & Reference

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    2007-Bellomo-De_Angelis-Delitala-Lecture Notes on Mathematical Modelling in Applied Sciences
    The Lectures Notes correspond to the first part of the course devoted to modelling issues to show how the application of models to describe real world phenomena generates mathematical problems to...

    Keywords: spring massLegendre polynomialsintegro-differential equationskinetic theory

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    2004-Mitchell-von Meien-Krieger-Dalsenter-A review of recent developments in modeling of microbial growth kinetics
    Mathematical models are important tools for optimizing the design and operation of solid-state fermentation (SSF) bioreactors. Such models must describe the kinetics of microbial growth.

    Keywords: Filamentous Fungisolid-state fermentationgrowth kineticsdiffusion-reactionoxygen transfer

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    1-001-SepartionOfVariables-TechniqueNarrative
    We discuss strategies to solve first order, ordinary differential equations with mathematical models when the variables may be separated.

    Keywords: solutionsstrategymethodapplications

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    2016-Lofgren-EtAl-Equations of the End Teaching Mathematical Modeling Using the Zombie Apocalypse
    In this article, we explore several uses of zombie epidemics to make mathematical modeling and infectious disease epidemiology more accessible to public health professionals, students, and the...

    Keywords: simulationinfectious diseasediseaseepidemicZombieWhite Zed

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    Genome Solver: Complete Set of Lessons
    The Genome Solver Project began as a way to teach faculty some basic skills in bioinformatics - no coding or scripting. These Lessons also work well in the undergraduate classroom, culminating...

    Keywords: bioinformaticsNIBLSEBioinformatics EducationBioinformatics and GenomicsC4. Bioinformatics toolsC5. Data retrievalC6. ModelsC8. Data typesC9. ImplicationsRecommended by NIBLSE

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    2012-Brian_Ingalls-Mathematical Modelling in Systems Biology An Introduction
    This is a comprehensive text with much biology background to motivate the mathematical modeling, exercises and answers, and many rich examples.

    Keywords: spatialsensitivity analysisgene regulatory networksstochasticbifurcationmetabolic networkselectrophysiologytransductionrate lawsbiochemical reactions

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    Mentoring Undergraduate Research Projects in Mathematical Biology
    Part of the 2015 SMB Minisymposium: Topics in Biomathematics Education

    Keywords: epidemiologymentoringcurriculumundergraduate researchGene regulatory networkpest management

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    1986-Cook-Witten-One-dimensional linear and logistic harvesting models
    Some of the results in the literature on simple one-dimensional, density dependent, discrete and continuous models-with and without harvesting-are reviewed.

    Keywords: logisticcontinuouspopulationlineardiscreteharvestinbg

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