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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Integrating student research projects into mathematical biology courses
    Part of the 2015 SMB Minisymposium: Topics in Biomathematics Education

    Keywords: Mathematical Biologycourseproject

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    Exploring the ecological niches and bioclimatic differences of the greater and lesser Capybara
    In my study, I explored the differences in ecological niches and bioclimatic preferences of the Greater and Lesser Capybara. Wallace was used in obtaining the locality and bioclimatic data...

    Keywords: ecology

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    CRISPR/Cas9 in yeast: a multi-week laboratory exercise for undergraduate students
    Providing undergraduate life-science students with a course-based research experience that utilizes cutting-edge technology, is tractable for students, and is manageable as an instructor is a...

    Keywords: bioinformaticsPCRphenotypingCRISPR/Cas9gene editingcloningGenotypingRestriction enzyme

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    Exploring Species Interactions with "Snapshot Serengeti"
    Authentic learning experiences are a valuable way for students to gain an in-depth understanding of the scientific process. However, implementing such experiences in large enrollment courses can be...

    Keywords: ecologyspecies interactionscitizen scienceCommunity Ecologyanimal behaviorScience Communicationmigrationanimal activityspecies distribution

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    BEDE Network Data Science Skills Curriculum Map
    The Biological and Environmental Data Education (BEDE) Network has produced this data science skills curriculum map as a flexible tool to help instructors highlight data science skills that they...

    Keywords: quantitative skillsscientific literacyCurriculum developmentdata science skills trainingdata literacy skills

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    SEAS CURE: Exploring Coral Biology Across Scales
    Complex biological concepts (like symbiosis and coral biology) that span multiple scales and cross disciplinary boundaries are often difficult for students to understand. This complexity is...

    Keywords: microscopyAnatomySymbiosisMetabolismbleachinginvertebratedinoflagellate

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    In-Class Workshops to Teach Introductory Biology Students about Undergraduate Research
    Decades of evidence support the premise that undergraduate research experiences are valuable endeavors for science students; however, a lack of knowledge about research and how to get involved can...

    Keywords: undergraduate research experiencesActive Learning WorkshopsResearch PreparationEquity in Research

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    Learning Frameworks Aid Goal-oriented Course Design
    As a new instructor it can be hard to know where to begin. Thankfully, CourseSource's learning frameworks (https://www.coursesource.org/courses) shaped my approach to teaching as a first year...

    Keywords: backward designlearning goalscourse design

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    Presence of Vegetation in Relation to Slope in Yosemite Valley, California
    Here we examine the relationship between the slope of a terrain and vegetation, measured by NDVI levels. I used satellite data from Yosemite Valley to analyze and test for statistical...

    Keywords: vegetation

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    Building a Model of Tumorigenesis: A small group activity for a cancer biology/cell biology course
    The multistep nature of tumorigenesis is a foundational concept in the context of Cancer Biology. Many students do not appreciate the complex nature of cancer development nor do they understand how...

    Keywords: pathwayscancerMolecular AlterationsRetrospective dataTumorigenesis

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    An Introduction to the Squirrel-Net Teaching Modules
    Although course-based undergraduate research experiences (CUREs) are gaining popularity in biology, most are designed for benchwork-based laboratory courses while few focus on field-based skills....

    Keywords: ecologybehaviortrade-offsScientific ProcessSquirrel-Net

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    A CURE for Salmonella: A Laboratory Course in Pathogen Microbiology and Genomics
    Rapid advances in genomics and bioinformatics, the vast amount of data generated by next-generation sequencing, and the penetration of the ‘-omics’ into many areas of biology have created a need...

    Keywords: epidemiologyresearchbioinformaticsgenomicspublic healthAntibiotic Resistant BacteriaSalmonellaDNA sequencingpathogenic bacteria

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    Enabling authentic ecological inquiries using research data and imageries in large classrooms
    Presentation made by Ben Wu et al. as part of the "Bringing Research Data to the Ecology Classroom: Opportunities, Barriers, and Next Steps” Session at the Ecological Society of America annual...

    Keywords: Ecological Society of America

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    An undergraduate bioinformatics curriculum that teaches eukaryotic gene structure
    Gene structure, transcription, translation, and alternative splicing are challenging concepts for many undergraduates studying biology. These topics are typically covered in a traditional lecture...

    Keywords: bioinformaticsGenome BrowsergenomicsRNAseqsplicingComputer ModelGene Structure

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    Electronic Lab Notebooks: Options for Building Data Management and Quantitative Reasoning Skills
    Presentation on Electronic Notebooks and Lab Archives given at the 2019 BioQUEST & QUBES Summer Workshop

    Keywords: 2019 QUBES/BioQUEST Summer Workshopelectronic notebookselectronic lab notebookslab archives

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    Learning R for Biologists: A Mini Course Grab-Bag for Instructors
    As biology becomes more data driven, teaching students data literacy skills has become central to biology curriculum. Despite a wealth of online resources that teach researchers how to use R, there...

    Keywords: Rdata analysisRStudio

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    RESCUE-Net - Developing a Faculty Network in a Biodiversity Hotspot: the Research Experiences in Southern California For Undergraduate Ecologists Network (RCN-UBE Introduction)
    RESCUE-Net is a network of faculty in Southern California dedicated to mentoring undergraduates in conservation research so that they can become the next generation of ecological leaders.

    Keywords: RCN-UBE Introduction

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    Overview of the Genomics Education Partnership
    Poster exhibited at the National Association of Biology Teachers (NABT) 2022 conference providing an overview of the Genomics Education Partnership including its benefits to faculty, students, and...

    Keywords: course-based undergraduate research experienceGenomics Education PartnershipNABT 2022

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    Assessing the water quality at Pescadero Creek, CA: does water turbidity and the creek’s composition affect the water quality?
    Right now in the world, there are many factors affecting the world’s environment. Environments, ecosystems, and weather throughout the world are changing due to the anthropocene. Humans are...

    Keywords: water quality

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    Correlation Between Shutdown Orders and CO Levels Across the United States
    Research was conducted in summer 2020 to analyze the effect of the shutdown orders due to COVID-19 pandemic on the CO levels across the United States. Since the shutdown orders during the...

    Keywords: airpollution

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