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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    My Fish Tank: An Active Learning Activity for Bacterial Nitrogen Metabolism
    This active learning activity introduces students to the second part of the nitrogen cycle, nitrification. In terrestrial and aquatic environments, bacteria from the Nitrosomonas and Nitrobacter...

    Keywords: nitrogen cyclenitrificationnitrifying bacteria

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    Sequence Similarity: An inquiry based and "under the hood" approach for incorporating molecular sequence alignment in introductory undergraduate biology courses
    Introductory bioinformatics exercises often walk students through the use of computational tools, but often provide little understanding of what a computational tool does "under the...

    Keywords: BLASTmultiple sequence alignmentsequence similarityphylogramZika virusAlgorithmScoring Matrix

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    2023-TechShareNotes. Differential Equations Modeling
    TechShareNotes is a web site with rich differential equation modeling html pages and this one is about mixing in one, two, and three tanks, with interesting questions and problems as well as...

    Keywords: population dynamicspredator-preycircuitreactionspring masspharmacokineticscooling

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    An undergraduate bioinformatics curriculum that teaches eukaryotic gene structure
    Gene structure, transcription, translation, and alternative splicing are challenging concepts for many undergraduates studying biology. These topics are typically covered in a traditional lecture...

    Keywords: bioinformaticsGenome BrowsergenomicsRNAseqsplicingComputer ModelGene Structure

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    Interdisciplinarity through a modular sustainability curriculum
    Poster on successful sustainability education in college curricula presented at the 2018 QUBES/BioQUEST Summer Workshop .

    Keywords: sustainabilityinterdisciplinary educationSummer Workshop 2018

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    Why Do I Need a Lab Notebook? Teaching Responsible Conduct of Research with CURE Lab Notebooks
    There are few instructional tools about data acquisition and management available for undergraduate students. I created this lesson as a Fellow of the Ethics Network for Course-Based Opportunities...

    Keywords: lab notebookresponsible conduct of researchdata acquisition/ management

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    2009-Agnes_Rash-Brian_Winkel-Birth_and_Death_Process_Modeling_Leads_to_the_Poisson_Distribution
    In this paper there are details of development of the general birth and death process from which we can extract the Poisson process as a special case.

    Keywords: ProbabilityMeanPoisson processbirth and death processinfinite number of differential equations

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    2019-Ekici_Plyley. Inquiry-Based_Modeling_of_Population_Dynamics_With_Logistic_Differential_and_Difference_Equations
    Inquiry-based learning activities on modeling and controlling the growth of locally relevant species, such as lionfish or sea turtles, are developed by the authors.

    Keywords: population dynamicslogisticInquiry-based modelingIBL

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    Gotcha! Which fly trap is the best? An introduction to experimental data collection and analysis
    Collecting data from experimental observations is an important component of the scientific process; likewise, the analysis of the data is essential to understanding the observed trends and patterns...

    Keywords: data analysisexperimental designdata collectionfruit fliesfly traps

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    Vitamin C for Colds? Writing LETTERS to Synthesize and Communicate Results from Multiple Studies
    Interpreting experimental results is a key part of evidence-based reasoning. However, it is challenging for students to synthesize data from multiple sources to reach their own conclusions. As...

    Keywords: pre-healthphysiologyScience Communicationscientific literacyScientific Processconventional wisdomscientific methods

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    Sounds of the Tropics: Part 3. Can you hear me? How do dolphins in Bocas del Toro, Panama communicate in a noisy habitat?
    This online module provides background information on dolphin communication and explores how a dolphin population responds to dolphin-watching activities in Panama.

    Keywords: Dolphin-watchingecotourismdolphin acousticshuman/nature interactions

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    A CURE for Salmonella: A Laboratory Course in Pathogen Microbiology and Genomics
    Rapid advances in genomics and bioinformatics, the vast amount of data generated by next-generation sequencing, and the penetration of the ‘-omics’ into many areas of biology have created a need...

    Keywords: epidemiologyresearchbioinformaticsgenomicspublic healthAntibiotic Resistant BacteriaSalmonellaDNA sequencingpathogenic bacteria

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    Learn biotechnology, biophysics and business through scientific thinking and innovation
    Scientific, leadership and innovation skills are also an integral framework of the curriculum. All of them together or individually are important for enhancement of knowledge, critical thinking,...

    Keywords: educationbusinessBiotechnologybiophysicsleadershiprecombinant DNAgroup workcloninginnovationscientific thinkingplasmid

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    1988-Steven_Strogatz-Love Affairs and Differential Equations.
    This is a system of differential equations to describe the love between Shakespeare’s Romeo and Juliet.

    Keywords: Romeo and Julietlove

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    It's a Substrate... It's a Protein...No - It's an Enzyme! Teaching Using 3D Serine Protease Physical Modeling Activities to Confront Misconceptions.
    Reported misconceptions of enzyme-substrate interactions highlight the necessity for better, targeted instructional tools and assessments. A series of active learning activities with corresponding...

    Keywords: Protein StructureEnzymes-Substrate InteractionsNoncovalent InteractionsGeometric ComplementaryElectronicsStereochemistrySerine Proteases

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    Real World Scenarios in Non-Majors Biology
    Students in non-majors’ biology courses may not choose careers that require biology content knowledge; however, all will encounter science in their lives. We redesigned a non-majors...

    Keywords: geneticsVaccinesScientific ProcessGMOsviruses

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    PhyloCards: a fun approach to exploring the local Wissahickon biodiversity, Chestnut Hill, Philadelphia, PA
    PhyloCards are educational trading cards that teach people about biodiversity, conservation, and ecosystem relationships. We used this educational tool to explore the Wissahickon Valley's...

    Keywords: species richnessPokemon Gobiodiversity literacytrophic chain

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    BEDE - Biological and Environmental Data Education Network: Preparing Instructors to Integrate Data Science into Undergraduate Biology and Environmental Science Curricula (RCN-UBE Introduction)
    The Biological and Environmental Data Education Network (BEDE Network) develops and shares teacher-training workshops, curricular designs, teaching modules, and best practices to help integrate...

    Keywords: computational toolsdata scienceRCN-UBE Introduction

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    2006-Salem-Abudiab-Labview-An Interactive Teaching Tool for a Differential Equations Class
    It is evident that computer based learning has become an essential part of education systems. It provides animation and interactive processes that are not possible with textbooks.

    Keywords: javavisualizationvirtual labpendulumLabviecomputer assisted instructionharmonic motion

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    Sorry to Eat and Run: A Lesson Plan for Testing Trade-off in Squirrel Behavior Using Giving Up Densities (GUDs)
    All animals need to find and compete for food, shelter, and mates in order to survive and reproduce. They also need to avoid being eaten by predators. Optimal foraging theory provides a framework...

    Keywords: ecologyanimal behaviorAnimal form and functionAnimal nutritionSquirrel-Net

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