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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Resources for Assessing Educational Interventions in Biology at the Collegiate Level
    Most scientific research is judged based on the quality of controlled experiments and carefully analyzed results. In addition, proper levels of regulation in terms of biosafety and animal usage are...

    Keywords: researchassessmentpedagogylearning gainsIRBregulatory compliance

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    SNAPSHOT SERENGETI: Analyzing Wildlife Ecological Relationships in an upper-level Ecology course
    Two assignments were created to develop skills in ecological hypothesis testing, data analysis and interpretation using the Snapshot Serengeti and Gorongosa camera trap data and graphical...

    Keywords: hypothesis testinggraphical analysis and interpretationsavannah biomeecological relationshipscompare and contrast to primary literature

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    Exploring Species Interactions with "Snapshot Serengeti"
    Authentic learning experiences are a valuable way for students to gain an in-depth understanding of the scientific process. However, implementing such experiences in large enrollment courses can be...

    Keywords: ecologyspecies interactionscitizen scienceCommunity Ecologyanimal behaviorScience Communicationmigrationanimal activityspecies distribution

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    Implementing an online module about impacts of pollution from gold mining in an undergraduate ecology course in the Pacific Northwest, USA
    Students learn about biomagnification of toxins, build skills in graphical interpretation, and apply field methods to tackle complex issues about small-scale gold mining in the Peruvian Amazon....

    Keywords: food websmercury biogeochemistryBioaccumulationbiomagnificationPeruvian Amazon

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    Venom Diversity & Evolution in Reptiles and Amphibians - An education module for university students
    This module contains information for a three part series introducing the venom system in reptiles and discussing it in an evolutionary context. In the first part venom and its ecological roles are...

    Keywords: geneticsEvolutionecologyHerpetologyAmphibans and ReptilesVenom

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    Choose Your Own Adventure: Control a Wildlife Disease Epidemic
    This educational game allows teams of students to try to control a simulated epidemic in United States snake populations using their epidemiological and ecological knowledge. It combines a "choose...

    Keywords: educational game

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    9-015-UnearthingTruth-ModelingScenario
    This project introduces \textit{electrical resistivity tomography}, a technique of interest for geophysical imaging, used to produce images of underground features or structures by using electrical...

    Keywords: geophysicalImagingStatistical inverse problemtunnelconductionHolocaustVilniusDivergence TheoremfluxLaplace's equationimpedanceelectrical resistivity tomographytomographyresistivity

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    Creating ownership through creative writing: Advice columns as term papers in an upper-level Animal Behavior course
    Poster on taking a creative writing approach to traditional term papers. Presented at the 2021 BIOME Institute.

    Keywords: writinganimal behaviorscience writing2021 BIOMEcreative writing

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    Urban stream invaders: a scientist spotlight featuring Dr. Piatã Santana Marques
    Students read and interpret data from a study which addresses how urbanization affects the invasive attributes of a non-native species. They also reflect on the identity of the lead researcher and...

    Keywords: ecologyInvasive SpeciesStream ecologyurban ecologynutrient pollution

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    Understanding Gene Prediction Programs
    Introduces students to the key biological concepts underlying computational gene prediction. Outcomes include ability to analyze and evaluate output of gene prediction programs, and reflect on...

    Keywords: Genome annotationSEA-PHAGESgene predictiongenemarkcoding potentialcodon biassix frame translation

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    Serenity now! Keep calm and do science with real data in the classroom
    Presentation on a free web application currently under development on QUBES called Serenity at the 5th Life Discovery Conference

    Keywords: data sciencetool:serenity5th Life Discovery- Doing Science Education conference (LDC)5th Life Discovery Conference

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    Serenity now! Keep calm and do science with real data in the classroom
    Session presented at NABT 2018 in San Diego, CA

    Keywords: NABTdata scienceeducational technologytool:serenitydata acumendata life cycle

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    What Shapes a River: Field Lesson
    This lesson introduces students to field methods and theoretical concepts regarding the factors that shape river environments and ecosystems. Introductory material is followed by instruction in...

    Keywords: substrateRiver Field Studies Network Fluvial GeomorphologyWolman Pebble CountBankful FlowSediment Transport.

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    A STEAM Approach to Understanding Water Systems
    Students will investigate their relationships to water through STEAM (science, technology, engineering, art, and mathematics) using a combination of science, art, and reflection and build new...

    Keywords: STEAMwater qualitypollutionRiver Field Studies Networkwatershedparticipatory mappingPhotovoice

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    Field sketching, geomorphic data, and the power of perspective
    Sketching is a powerful tool to capture observations about the landscape and preserve a picture of a field site at a particular time. At the same time, our perspectives, be they disciplinary,...

    Keywords: sketchingstream dischargedata collectionGeomorphologyRiver Field Studies Networkgrain sizeperspective

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    OCELOTS - A Network for Facilitating Online Content for Experiential Learning of Tropical Systems (RCN-UBE Introduction)
    The OCELOTS Network connects tropical biology researchers with specialists in pedagogy, 4DEE, software, and media to create and implement research-based online modules in tropical biology,...

    Keywords: RCN-UBE Introduction

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    1-027-StochasticProcesses-ModelingScenario
    We build the infinite set of first order differential equations for modeling a stochastic process, the so-called birth and death equations. We will only need to use integrating factor solution...

    Keywords: VarianceMeanstochasticrandomoperations researchindustrial engineeringPoisson processtraffic

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    Healing the scars: A tropical rainforest carbon cycling module implemented in a Forest Ecology course
    This publication describes my implementation of this module on tropical rainforest carbon cycling in an undergraduate forest ecology course for majors in the Department of Silviculture and Forest...

    Keywords: carbon cyclingnutrient cyclingenergy flowecosystem productivity

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    How Many Squirrels Are in the Shrubs? A Lesson Plan for Comparing Methods for Population Estimation
    Estimating the population sizes of animals is a key skill for any student interested in ecology, conservation, or management. However, counting animals in natural habitats is difficult, and the...

    Keywords: population ecologywildlife managementpopulation estimationsciuridaeSquirrel-Net

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    A CURE for Salmonella: A Laboratory Course in Pathogen Microbiology and Genomics
    Rapid advances in genomics and bioinformatics, the vast amount of data generated by next-generation sequencing, and the penetration of the ‘-omics’ into many areas of biology have created a need...

    Keywords: epidemiologyresearchbioinformaticsgenomicspublic healthAntibiotic Resistant BacteriaSalmonellaDNA sequencingpathogenic bacteria

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