You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    A Simple Method for Predicting a Molecule's Biological Properties From Its Polarity
    The distinction between very polar and less polar substances is a foundation of biochemistry, cell biology, and physiology; it surfaces in multiple concept inventories and elaborations of...

    Keywords: Diffusionsolubilitycovalent bondshydrophilichydrophobicpartition coefficientplasma membranepolarity

    1764

    views

    451

    downloads

    0

    comments

    0

    adaptations

    2016-Rob_deBoer-Population Dynamics  A Graphical Approach
    This book is an introduction into modeling population dynamics in ecology. Because there are several good textbooks on this subject, the book needs a novel ecological niche to justify its existence.

    Keywords: mathematical modelstabilitycompetitionSIRbifurcationconsumptionpopulation population dynamicsgeneral replicationnonlinear density dependenciesfunctional responsepersistencephase plan analysis

    170

    views

    56

    downloads

    0

    comments

    0

    adaptations

    Restoring Tropical Forests: Implementing an online module in an undergraduate biology course in Indonesia
    This resource describes my implementation of a module on tropical forest restoration in Costa Rica for an undergraduate Ecology course at Universitas Gadjah Mada, Indonesia....

    Keywords: RestorationEcosystem Servicesforest restorationtransdisciplinary researchsocial forestryhuman well-beingcommunity-based

    309

    views

    139

    downloads

    0

    comments

    0

    adaptations

    BioMolViz - Development of an Inclusive Community for the Instruction of Visualizing Biomolecules (RCN-Introduction)
    BioMolViz is a community dedicated to advancing biomolecular visualization education. We provide training, teaching tools and validated visual literacy assessments. The BioMolViz Library—our online...

    Keywords: RCN-UBE Introduction

    353

    views

    114

    downloads

    0

    comments

    0

    adaptations

    2015-European_Bioinformatics_Institute-Bio-Models-Database
    Bio Models Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references. All models are...

    Keywords: biologydatabasebioinformaticsModelscomputational models

    135

    views

    61

    downloads

    0

    comments

    0

    adaptations

    Bioimage Informatics Activity
    Students use basic bioimage informatics techniques to acquire quantitative data from images of cultured cells and test a hypothesis about the effect of a genetic mutation on cellular phenotypes

    Keywords: geneticsResources @ HHMI - BioInteractivegenomicscancergenetic basis of diseasebiology of cells

    1381

    views

    1133

    downloads

    0

    comments

    0

    adaptations

    Bacteria to Brains in Backyard Coyotes: An Interdisciplinary Pedagogical Case Study
    Our interdisciplinary pedagogical case study explores the differences between rural and urban coyotes at the levels of organismal and community ecology. The focus is on how coyotes’ gut microbiomes...

    Keywords: Vision and Changeecologyintroductory biologyImmunologymicrobiologydietanimal behaviormicrobiomecore conceptscoyotesBraingut-brain axisImmunoReachcytokinedysbiosis

    315

    views

    50

    downloads

    0

    comments

    0

    adaptations

    Evaluating Representation in Science Through a Peer-Reviewed Research Study
    The demographic representation of scientists featured in biology curricular materials do not match that of the undergraduate biology student population or of the U.S. population. In this lesson, we...

    Keywords: societyRepresentationSTEM equity

    643

    views

    99

    downloads

    0

    comments

    0

    adaptations

    Using the Cell Engineer/Detective Approach to Explore Cell Structure and Function
    As instructors of introductory biology courses for majors and non-majors, we have struggled with teaching the concept of cell structure and function in an engaging way.  However, this is a...

    Keywords: cell functionCell StructureCellular diversityDynamic cellular functionOrganelle function

    3136

    views

    1260

    downloads

    0

    comments

    0

    adaptations

    Exploring Primary Scientific Literature through the Lens of the 5 Core Concepts of Biology
    Biology students at the undergraduate level usually excel in knowing biological facts; however, they often struggle with connecting these facts to specific biological principles. In parallel,...

    Keywords: 5 core conceptsconnecting facts to principlesreading primary scientific literature

    1629

    views

    306

    downloads

    0

    comments

    0

    adaptations

    Observing the Birds of El Paso: Revisiting historical localities online and in the field
    In this set of activities, students are introduced to several features and use cases of museum databases to understand the importance of historical natural history specimens and their data. Using...

    Keywords: databaseBiodiversityOrnithologynatural history museumsspecies distributionsdistance learningField Experiences

    388

    views

    119

    downloads

    0

    comments

    0

    adaptations

    Polyploidapalooza: Exploring the diversity and evolution of polyploid plants and animals
    This series of modules explores the complex world of polyploidy, including species formation, cell division, evolution, conservation, and economic importance. We focus on polyploidy across the...

    Keywords: Evolutionconservationnatural historyCell DivisionhybridizationPolyploidygenome duplicationallopolyploidyautopolyploidy

    311

    views

    350

    downloads

    0

    comments

    0

    adaptations

    2017-Justin_Krueger-Parameter Estimation Methods for Ordinary Differential Equation Models with Applications to Microbiology
    We demonstrate the feasibility of principal differential analysis using simulation studies and then apply the method to intestinal and vaginal microbiota data.

    Keywords: microbiologyLotka Volterrramicrobiota

    208

    views

    62

    downloads

    0

    comments

    0

    adaptations

    2016-Barbarossa-Kuttler-Mathematical Modeling of Bacteria Communication in Continuous Cultures
    This paper presents a simple system of delay differential equations (DDEs) for quorum sensing of Pseudomonas putida with one positive feedback plus one (delayed) negative feedback mechanism.

    Keywords: gene regulatory networkschemostatbifurcationNumerical Simulationquorum sensing

    114

    views

    51

    downloads

    0

    comments

    0

    adaptations

    2014-Michael_Monagan-The Mortgage Payment Problem Approximating a Discrete Process with a Differential Equation
    In this article and a subsequent article I will give two non-standard examples that I've found helpful. The one presented here is a first order linear system. Second order systems and non-linear...

    Keywords: compartmentheatinghouse

    129

    views

    56

    downloads

    0

    comments

    0

    adaptations

    2011-Lucas_Pulley-Analyzing Predator-Prey Models Using Systems of Ordinary Linear Differential Equations
    This research focused on applying biological mathematics to analyzing predation relationships, especially the relationship between the Canadian Lynx and the Snowshoe Hare.

    Keywords: simulationpredator-preyLotka-VolterrapopulationCanadian LynxSnowshoe Harecritical values

    181

    views

    50

    downloads

    0

    comments

    0

    adaptations

    2006-Michelle_LeMasurier-Nonstandard Topics for Student Presentations in Differential Equations
    An interesting and effective way to showcase the wide variety of fields to which differential equations can be applied is to have students give short oral presentations on a specific application.

    Keywords: Presentationstudent presentation

    171

    views

    43

    downloads

    0

    comments

    0

    adaptations

    1-105-AnimalFall-ModelingScenario
    This project uses Newton's Second Law of Motion to model a falling animal with a resistance term proportional to cross sectional area of the animal, presumed to be spherical in shape.

    Keywords: animalNetwon's Second Law of Motionfalling bodyterminal velocityair resistanceNewtonair frictionfall

    273

    views

    118

    downloads

    0

    comments

    0

    adaptations

    Grassy Narrows and Muskrat Falls Dam: Hypothesis Testing and t-Tests
    Students are introduced to concepts of hypothesis testing using elementary hypothesis tests, t-tests, and p-values as they compare a given fish population for methylmercury levels (using real and...

    Keywords: statisticsmathematicsbiostatisticsecologybiologygraphingp-valuest-testshypothesis testingin-class activityZoologymercury biogeochemistrybiostatistics - generalfish populationqbccBiogeochemical cyclesInterpret graphsSolving Equations and InequalitiesConcepts in StatisticsElementary Hypothesis TestingMethylmercurydamsBioaccumulationtraditional dietsmercurymercury poisoningnative peopleindigenous populationCanadahydroelectricexplaining statisticsusing statisticsMake probability calculations

    1825

    views

    1487

    downloads

    0

    comments

    3

    adaptations

    Intro to BIOMAAP - Student Math Anxiety Overview
    This presentation is intended as a stand alone 45 minutes-1 hour presentation to give students general information on math anxiety and a few strategies to try on their own.

    Keywords: math attitudesResources @ BIOMAAP

    1138

    views

    278

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search