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    2001-Knisley-Kerley-Using data to motivate the models used in introductory differential equations
    In this paper, the data itself is used to motivate mathematical models in introductory mathematics courses. In doing so, various regression and optimization techniques are illustrated.

    Keywords: regressionlogisticTorricelli's Lawgrowthperiodic process

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    1986-Cook-Witten-One-dimensional linear and logistic harvesting models
    Some of the results in the literature on simple one-dimensional, density dependent, discrete and continuous models-with and without harvesting-are reviewed.

    Keywords: logisticcontinuouspopulationlineardiscreteharvestinbg

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    1-067-ModelingWithSigmoidCurves-ModelingScenario
    The assignment considers two well-known models of population growth, Verhulst-Pearl and Gompertz models, for which qualitative and quantitative analyses are provided. The graphs of the...

    Keywords: logisticGompertzsigmoidVerhulst-Pearl

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    1-114-EarthClimate-ModelingScenario
    In this modeling scenario, we investigate the Earth's climate using a zero-dimensional energy balance model. Energy balance models are climate models that try to predict the average surface...

    Keywords: climateenergytemperaturelinearizationphase linesenergy balance modelroot finding

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    6-018-ExploringSIRModel-ModelingScenario
    Students will transform, solve, and interpret Susceptible Infected Recovered (SIR) models using systems of differential equation models. The project is progressively divided into three parts to...

    Keywords: population dynamicssensitivitydiseaseSIR modelsepidemicrumors

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    A Very Basic Tutorial for Performing Linear Mixed Effects Analyses: Tutorial 2
    The second of two tutorials that introduce you to linear and linear mixed models. This tutorial serves as a quick boot camp to jump-start your own analyses with linear mixed effects models.

    Keywords: statisticsRdata analysisgraphingconceptsstatsregressionmixed modelslinear modelsfixed effectsrandom effectsintroductionResources @ QUBES - Teaching & Referencetechnologytutorial 2boot campbeginner

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    Teaching Biodiversity with Museum Specimens in an Inquiry-Based Lab
    In response to the growth of biology datasets and broad efforts to digitize data, an increasingly important skill for science students is the management and analysis of large datasets. We designed...

    Keywords: data analysisnatural historyphylogenyBiodiversitymammalsAllen's RuleBergmann's Ruleecogeographymuseum research

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    The impact of diversifying and humanizing science role models on student attitudes and interest in science careers
    We introduced diverse and humanized scientist role models into data literacy instruction and quantified changes in student attitudes towards science. We found that the impact of science role models...
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    Diversity and Inclusion in Animal Behavior – ABI Faculty Development Program
    In this course, students will learn about the study of behavior from an evolutionary perspective. We will look at the mechanisms underlying behavior and how behavior develops in an animal’s...

    Keywords: ecologyanimal behaviorpsychologyDiversity and Inclusion

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    Creating ownership through creative writing: Advice columns as term papers in an upper-level Animal Behavior course
    Poster on taking a creative writing approach to traditional term papers. Presented at the 2021 BIOME Institute.

    Keywords: writinganimal behaviorscience writing2021 BIOMEcreative writing

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    2011-Nakul-Chitnis-Introduction to Mathematical Epidemiology - Deterministic Compartmental Model
    Deterministic compartmental models form the simplest models in the mathematical study of infectious disease dynamics. They assume that a population is homogenous (all people are the same) and the...

    Keywords: sensitivitydiseaseinfectionthresholdcompartmentbifrucation

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    2002-Nelson-Perelson-Mathematical analysis of delay differential equations models of HIV-1 infection
    We develop and analyze a set of models that include intracellular delays, combination antiretroviral therapy, and the dynamics of both infected and uninfected T cells.

    Keywords: infectionHIVT cells

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    1981-Nielsen-Rosenfeld-Substantive Interpretations of Differential Equation Models
    The use of differential equations models to study social processes has been increasing rapidly. There are, however, ambiguities in the interpretation of the parameters of these models.

    Keywords: sociologypoliticsintragenerational mobilitypolitical mobility

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    Discrete Math Modeling with Biological Applications (Course Materials)
    These are the materials for Math 214 offered at Rhodes College.

    Keywords: labsagent-based modelingDiscrete Difference Equationsmatrix modelscoursebiomath coursedemonstrationin-class activitylab protocolproblem set

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    Data from: Advancing population ecology with integral projection models: a practical guide
    Review important resources for building IPMs and provide a comprehensive guide, with extensive R code, for their construction.

    Keywords: IPMintegral projection modelsdemographyelasticitylife historymatrix projection modelpopulation growth ratepopulation projection modelsensitivitystage structurevital ratesResources @ DryadResources @ QUBES - Data

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    SEAS CURE: Exploring Coral Biology Across Scales
    Complex biological concepts (like symbiosis and coral biology) that span multiple scales and cross disciplinary boundaries are often difficult for students to understand. This complexity is...

    Keywords: microscopyAnatomySymbiosisMetabolismbleachinginvertebratedinoflagellate

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    2015-European_Bioinformatics_Institute-Bio-Models-Database
    Bio Models Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references. All models are...

    Keywords: biologydatabasebioinformaticsModelscomputational models

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    2014-Wang-EtAl-Estimating Mixed-Effects Differential Equation Models
    When multiple replicates of measurements are available for the dynamic process, it is of great interest to estimate mixed-effects in the ODE model for the process. We propose a semiparametric...

    Keywords: pharmacokineticsdynamic modelssmoothingsplinemixed-effects modelsHiV combination therapy

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    Integrating the modeling of biogeochemical cycles and energy flow
    This in-class activity challenges students to create and then integrate models of how carbon, nitrogen, water and energy all move within an ecosystem. Using 15 provided standard pools, they work...

    Keywords: modelingecologyintegration4DEE FrameworkBiogeochemical cycles

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    Using Regression Models to Examine the Effect of Carbon Dioxide on Fluid pH
    In this activity students will use statistics and regression models to explore the effects of carbon dioxide on blood pH by measuring pH changes that occur over time as carbon dioxide reacts with...

    Keywords: BiochemistryphysiologyAnatomyGeneral BiologyChoosing modelsCreate graphsInterpret graphsConcepts in Statisticscreate modelsmake predictions

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