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    2000-Erdman-Morelock-A Study of Kinetics The Estimation and Simulation of Systems of First-Order Differential Equations
    This paper introduces new and old features of the SAS System for the estimation and simulation of systems of first-order differential equations with emphasis on examples in kinetics.

    Keywords: kineticsSAScompartmentpharmacokinetics

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    1-002-Tossing-ModelingScenario
    We offer students simulation experience or data from a simulation and ask them to model the simulation using several approaches, to include exponential decay fit, difference equation, and...

    Keywords: Modeling and simulationexponentialdecaydice

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    6-075-LorenzSystemSimulation-ModelingScenario
    The Lorenz system is examined by students as a simple model of chaotic behavior or strange attractor. MATLAB code is created to find the numerical solutions of the Lorenz’ system of nonlinear...

    Keywords: chaososcillatorLorenzwaterwheelstrange attractorbifurcation effect

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    Michaelis-Menten Enzyme Kinetics
    In this simulation, equations used in enzyme kinetics (Michaelis-Menten, Eadie-Hofstee, Dixon, and Lineweaver-Burk) are modeled under various conditions.

    Keywords: Michaelis-Mentenenzymesenzyme kinetics

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    Web Popgen
    A Hardy-Weinberg simulation program.

    Keywords: Hardy-Weinbergpopulation geneticscomputer simulationsGenetic DriftmutationNatural Selection

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    Populus: Simulations of Population Biology
    Link to Populus Software

    Keywords: simulationpopulation growthpopulus

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    1-101-ClassMMDeathImmigration-ModelingScenario
    We offer students an opportunity to generate unique data for their team on a death and immigration model using m&m's and then pass on the data to another student team for analysis with a model they...

    Keywords: simulationimmigrationdata collectiondeath

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    3-076-CircuitBuilding-ModelingScenario
    In this project students will establish a mathematical model for an electric circuit as a second-order ordinary differential equation with constant coefficients.

    Keywords: simulationexperimentMultisimcircuitinductancecapacitorKirchhoff's Voltage Lawresistor

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    1-062-BacteriaGrowth-ModelingScenario
    We offer students a simulation experience or data from a simulation and ask them to model the simulation using several approaches: exponential growth fit, difference equation, differential...

    Keywords: bacteriaexponentialgrowth

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    Cell Collective: Learning biology with modeling and simulations
    Cell Collective is an online, research-grade modeling platform adapted to engage students in creating and simulating dynamic models of biological processes.

    Keywords: modelingsimulationSimulationsCell Collective

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    3D FractaL-Tree
    3D FractaL-Tree allows scientists to collect data from actual specimens in the field or laboratory, insert these measurements into a spatially explicit L-system package, and then visually compare...

    Keywords: fractalsL-systems

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    6-020-AlgaePopulationSelf-Replenishment-ModelingScenario
    This modeling scenario investigates the massive algal blooms that struck Lake Chapala, Mexico, in 1994. A

    Keywords: algaepopulationMexicoqualitativecompartmentlinearizationJacobianlaknondimensionalizationpplane

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    1-084-GoingViral-ModelingScenario
    Students employ randomization in order to create a simulation of the spread of a viral disease in a population (the classroom). Students then use qualitative analysis of the expected behavior of...

    Keywords: simulationlogisticrandomfittingpartial fractions

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    1-125-DiceyPopulation-ModelingScenario
    We offer students an opportunity to generate data for their team on a death and immigration model using 12 and 20 sided dice and then pass on the data to another student team for analysis with a...

    Keywords: simulationimmigrationdeathdice

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    2019-Hu-Treinen-One-step_method_for_modelling_longitudinal_data_with_differential_equations
    This study proposes a new approach to estimate the parameters in differential equation models used to describe non-linear trajectories of longitudinal data.

    Keywords: simulationparameter estimationshoppingfittingbehaviour

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    1-001d-HotelPopulationDecay-ModelingScenario
    You will be modeling the following situation: 100 people are in a hotel. Each day, each person has a random chance of 50% of leaving the hotel. No new people enter the hotel. Before you run the...

    Keywords: simulationlogisticexponential decayfitting

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    Analyzing Nutrient Simulation Experiments with a one-way ANOVA
    We discuss what tests are appropriate to analyze the data from nutrient simulation experiments. They will conduct one-way ANOVAs and a post hoc test using a dummy dataset and interpret the results.

    Keywords: biostatisticsInterdisciplinary STEMR programming languageaquatic ecologylimnologySwirl

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    Cell Collective
    Session presentation on an easy-to-use software, that makes this computational modeling approach accessible to any student and instructor

    Keywords: computational modelSummer Workshop 2018

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    Avida-ED
    Avida-ED is an award-winning educational application developed at Michigan State University for undergraduate biology courses to help students learn about evolution and scientific method.

    Keywords: simulationEvolutionbiologyscientific methodResources @ QUBES - Softwaredigitalhypotheses

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    Modeling: A Primer - The crafty art of making, exploring, extending, transforming, tweaking, bending, disassembling, questioning, and breaking models
    Explore how to use, analyze, and criticize some important and historically influential models in biology in this text only module.

    Keywords: modelingsimulationmoduleResources @ BioQUESTtextbookmodulesmathematical modeling

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