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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Using QIIME to Interpret Environmental Microbial Communities in an Upper Level Metagenomics Course
    Metagenomics is rapidly evolving due to advances in sequencing technologies and bioinformatics, but without proper training to interpret these datasets, student understanding remains limited. Aimed...

    Keywords: microbiome

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    The Pipeline CURE: An Iterative Approach to Introduce All Students to Research Throughout a Biology Curriculum
    Participation in research provides personal and professional benefits for undergraduates. However, some students face institutional barriers that prevent their entry into research, particularly...

    Keywords: epigeneticsundergraduate researchmendelian inheritanceSelf-EfficacyCUREsnature of scienceResiliencecurriculum strategiesreprogramming

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    1-054-GrowthInFarmland-ModelingScenario
    An enriching project developing a model from data with missing temporal information is described. Students fit functions to the data that leads to the creation of a differential equations model,...

    Keywords: fittingfarmfarmland

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    Creating Game-Based IDEAs using Twine (BIOME 2022)
    Games and gamification-principles are powerful tools that increase engagement and improve learning outcomes when applied appropriately to STEM instruction. The interactive nature of games allows...
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    Diseasebots HEXBUG Lab
    This module explores the effects of host density on contact rates and transmission of pathogens using a hands-on experiment with HEXBUG robots.
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    A Pipeline in Paradise, Part 1: Learning the Relevant Science
    This case requires students to integrate information across the following five “knowledge domains” to develop a baseline understanding of the problem.

    Keywords: case studysocio-environmental data

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    SCIENCE/Fiction: Modular Template for Class Design
    We present a modular scaffold for designing an introductory seminar using speculative fiction and science papers to welcome university undergraduates to the biology major. A list of twelve possible...

    Keywords: geneticscell biologyneurosciencesystems biologyScience Fiction

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    A Muscular Dystrophy Case Study Illustrating the Phenotypic Effects of Mutation
    Mutations in genes can lead to a variety of phenotypes, including various human diseases. Students often understand that a particular mutation in a single gene causes a disease phenotype, but it is...

    Keywords: mutationProtein Structureethicscentral dogmahuman disease

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    Exploring Indigenous Viewpoints in the Undergraduate Biology Classroom: An Environmental Case Study Incorporating Hawaiian Traditional Ecological Knowledge
    Changing science education to foster greater equity and inclusion for Indigenous students will require effort from instructors and institutions. Instructors can help by including Traditional...

    Keywords: ecologycase studyenvironmentsystems thinkingTraditional ecological knowledgeindigenous knowledgehawai'idecolonizing scienceNative knowledgeFish ponds

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    Knowing your own: A classroom case study using the scientific method to investigate how birds learn to recognize their offspring
    Understanding the scientific method provides students with a necessary foundation for careers in science-related fields. Moreover, students can apply scientific inquiry skills in many aspects of...

    Keywords: scientific methodNatural Selectionbrood parasitism

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    Investigating human impacts on stream ecology: locally and nationally
    This module is a modification of the Nuding and Hampton module in TIEE Volume 8. This modified module includes data from Alaska and is modified to be completed as an asynchronous lab in an online...

    Keywords: aquatic macroinvertebratesAlaskaStream ecologynutrient pollutionHuman Impacts of Ecosystemsecological monitoringasynchronous learning

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    Do urban yards serve as a refuge for native land snail species?
    This module contains a series of take-home activities to prepare students to analyze their own dataset collected in lab.

    Keywords: urban ecosystemsrefugia from habitat lossJMP

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    REMNet Tutorial, Excel Part 6: Making Microbiome Column Charts 5.3.19
    Video on creating column charts in Excel from the Research Experiences in Microbiomes Network

    Keywords: ExcelVideoMicrobiology Educationmicrobiomesresearch in the classroomREMNeturban microbiomes

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    Teaching Cancer Biology Through a Lens of Social Justice
    The biology classroom is not separate from the greater context of society; social issues can and should be presented in connection with the content. Here we present an example of antiracist...

    Keywords: assessmentcancersocial justicePOGILAlignmentPublic ExamPublic

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    6-015-CombatingEbolaEpidemic-ModelingScenario
    This project offers students a chance to make a policy recommendation based on analysis of a nonlinear system of differential equations (disease model). The scenario is taken from the fall of 2014...

    Keywords: diseaseEbolaAnalysisPolicydecision

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    BioQUEST Webinar: CourseSource - YouTube
    Follow the link to the webinar video, "An Introduction to the CourseSource Journal and Making Your Own Collections". This webinar provides an overview of CourseSource, how to publish your teaching...
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    A Hands-on Introduction to Hidden Markov Models
    In this Lesson, we describe a classroom activity that demonstrates how a Hidden Markov Model (HMM) is applied to predict a eukaryotic gene, focusing on predicting one exon-intron boundary. This HMM...

    Keywords: transcriptionexonintronsplicing

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    Discovery Poster Project
    Engaging in undergraduate research can be exciting yet intimidating to first-year students at large research universities. For first-generation college students, whose pre-college exposure to...

    Keywords: researchprimary literaturePostercore concepts

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    2019 EDSIN Conference Proceedings
    Bringing Conversations on Diversity and Inclusion in Data Science to the Ecological and Environmental Sciences, was a 3-day conference hosted at the UCAR's Center Green in Boulder, Colorado, April...

    Keywords: data scienceEquityenvironmental sciencediversityinclusionconference proceedingsEnvironmental Data Science Inclusion Network

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    Transforming your CUREs with SENCER
    Presentation on Science Education for New Civic Engagements and Responsibilities given as part of the 2020 BioQUEST & QUBES BIOME Institute: Cultivating Scientific Curiosity.

    Keywords: course based undergraduate research experiencesCURESENCERcivic engagement

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