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    Using a Primary Cell Culture Model to Study the Neural Extracellular Matrix
    The extracellular matrix (ECM) provides structural support to cells, but also has key roles in mediating cell adhesion, cell signaling, and differentiation. While this topic is discussed in the...

    Keywords: Neural extracellular matrixPerineuronal netPrimary neuronal culture

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    Agent-Based Modeling Course Materials
    Materials created for an upper level ABM course. Prerequisite: Students have taken either (a) another modeling course, or (b) the introductory computer science sequence.

    Keywords: agent-based modelingindividual-based modelingcourse materials

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    2007-Exben_Friis-Jensen-Modeling and Simulation of Glucose-Insulin Metabolism
    In this thesis one of the models of diabetes, Bergman’s minimal model is described trough derivation and simulations.

    Keywords: Metabolisminsulin resistanceglucosePID controllerintolerance

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    2010-Kar-Chakraborty-Bioeconomic_modelling_of_a_prey_predator_system_using_differential_algebraic_equations
    We propose a biological economic model based on prey-predator dynamics where the prey species are continuously harvested and predation is considered with type II functional response.

    Keywords: economicsbifurcationharvestfisheryequilibriumdifferential algebraic equation

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    2017-Varanis-Mereles-Mathematical Model of a Vehicle Crash A Case Study
    The model proposed in this paper allows one to obtain the parameters of the system, and then compare them with the ones obtained experimentally to test the suitability of the model with the vehicle...

    Keywords: case studyRunge-Kuttaspring mass dampervehicle crash

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    2017-Suebcharoen-Analysis of a Predator-Prey Model with Switching and Stage-Structure for Predator
    This paper studies the behavior of a predator-prey model with switching and stage-structure for predator.

    Keywords: stage structurepredatorpreybifurcationswitching

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    2016-Starling-EtAl-Local Brewery - A Project for Use in Differential Equations Courses
    We describe a modeling project designed for an ordinary differential equations (ODEs) course using first-order and systems of first-order differential equations to model the fermentation process in...

    Keywords: BEERFermentationbrewery

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    2016-Helena_Sofia_Rodrigues-Application of SIR epidemiological model new trends
    In this paper, the basic transmission model is analyzed, as well as simple tools that allows us to extract a great deal of information about possible solutions. A set of applications - traditional...

    Keywords: epidemiologybasic reproduction numberSIR

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    2015-Sivakumar-EtAl-Approximate Analytical Expression of Concentrations in a Kinetic Model for Biogas Generation from Banana Waste
    The initial value problem in a kinetic model for biogas generation from banana waste is discussed. The model involves the system of non-linear differential equations which has variety of non-linear...

    Keywords: chemical kineticsMichaelis-Menten kineticsanaerobic digestionacidogenic stepsbananamethanogenic stepswastes

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    2009-Marten-EtAl-Derivation and analysis of an ordinary differential equation for epilepsy dynamics
    In this paper we describe how an ordinary differential equation model of corticothalamic interactions may be obtained from a more general system of delay differential equations.

    Keywords: delayepilepsy dynamicsepilepsybistabilityseizure activity

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    2014-Bozkurt-Peker-Mathematical modelling of HIV epidemic and stability analysis
    A nonlinear mathematical model of differential equations with piecewise constant arguments is proposed. This model is analyzed by using the theory of both differential and difference equations to...

    Keywords: diseaselogisticHIVpiecewise constantIndia

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    1999-PS_Crooke-S_Hota_JJ_Martini-JR_Hochkiss-A Mathematical Model for Carbon Dioxide Exchange
    A mathematical model is presented to study the effect of Tracheal Gas Insufflation (TGI) on the alveolar ventilation during passive, mechanical ventilation.

    Keywords: mechanical ventilationventilationcarbon dioxide exchangetracheal gas insufflationalveolar ventilationshunttwo-compartment model

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    6-009-FakeNews-ModelingScenario
    In modern society, creating and disseminating information is easier than ever. In this project, you will model the spread of fake news and investigate ways to deter distributing misinformation.

    Keywords: sensitivity analysisSIR modelsSIS modelfake news

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    2019-Ekici_Plyley. Inquiry-Based_Modeling_of_Population_Dynamics_With_Logistic_Differential_and_Difference_Equations
    Inquiry-based learning activities on modeling and controlling the growth of locally relevant species, such as lionfish or sea turtles, are developed by the authors.

    Keywords: population dynamicslogisticInquiry-based modelingIBL

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    Regression: Tree Rings and Measuring Things
    Students develop scatter plots of growth rings by tree diameters and determine the equation of their best fit line.

    Keywords: NIMBiosregressiontree ringsline of best fit

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    Is bigger always better? An investigation on the effect of drought on different sizes of trees
    This data set was compiled from worldwide data to examine the effects of drought on trees. Included in the dataset are measurements of growth and mortality as they relate to the size category of...

    Keywords: statisticsforest ecologydata analysisclimate changeANOVAGraphing Functionsforest health

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    2008-Ribbing-EtAl-Mathematical models of diabetes progression
    Writing a good model for diabetes progression is difficult because the long time span of the disease makes experimental verification of modeling hypotheses extremely awkward. underlying the

    Keywords: physiologyclinical trialsdiabetesdiabetes progression

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    2020-Chen_Et_Al-MathModel_Simulation_Phase-Based_Transmissability_Corona_Virus
    In this study, we developed a Bats-Hosts-Reservoir-People transmission network model for simulating the potential transmission from the infection source (probably be bats) to the human infection.

    Keywords: basic reproduction numbercoronavirusnext generation matrixtransmissibilitynovel coronavirus

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    The ODD protocol: A review and first update
    The ‘ODD’ (Overview, Design concepts, and Details) protocol was published in 2006 to standardize the published descriptions of individual-based and agent-based models (ABMs).

    Keywords: agent-based modelabmstandardizationODD protocolModel descriptionModel formulationScientific communicationChapter 3model replic

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    REMNet Tutorial, R Part 2: Importing Your Microbiome Data into R 5.3.19
    Video on importing data into R from the Research Experiences in Microbiomes Network

    Keywords: growth mindsetVideoMicrobiology EducationR programming languagemicrobiomesmath attitudesResources @ BIOMAAPmistakesvalue of mistakesresearch in the classroomREMNeturban microbiomes

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