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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    The impact of diet and antibiotics on the gut microbiome
    The goal of this article is to describe an active learning exercise that can be used in a variety of advanced microbiology courses, including bacterial physiology, ecology, or systems biology. The...

    Keywords: microbiomeenvironmental controlhost responsemetabolites

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    An Introduction to Statistical Learning: with Applications in R
    This book provides an introduction to statistical learning methods and is aimed for upper level undergraduate students, masters students and Ph.D. students in the non-mathematical sciences.

    Keywords: linear regressiontextbookclassificationcourseclustering coefficientR programming languagestatistical learningmachine learninglogistic regressionresamplingmodel selectionGeneralized additive modelsdecision treesprincipal components analysisMOOCResources @ QUBES - Teaching & Reference

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    Out of Your Seat and on Your Feet! An adaptable course-based research project in plant ecology for advanced students
    University capstone projects can offer science students a rich research experience that illustrates the process of doing scientific research, and can also help students better choose future...

    Keywords: statisticsactive learningecologyinterdisciplinaryplantscommunicating sciencegroup workfield workproces of science

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    Modeling the Research Process: Authentic human physiology research in a large non-majors course
    Laboratory experiences in large-enrollment introductory science courses often utilize “cookie-cutter style” laboratory experiences due to the relative simplicity of setting up the lab...

    Keywords: data analysishypothesis testingexperimental designphysiology

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    2016-Banks-EtAl-Modeling Bumble Bee Population Dynamics with Delay Differential Equations
    To provide a tool for projecting and testing sensitivity of growth of populations under contrasting and combined pressures, we propose a delay differential equation model that describes...

    Keywords: population modelReproductionspline approximationsBombus terrestrisneonicotinoidsbumble bee

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    1999-Khorasheh-Ahmadi-Gerayeli-Application of Direct Search Optimization for Pharmacokinetic Parameter Estimation
    For simple pharmacokinetic compartmental models, analytical solution to the governing differential equations provide a mean to evaluate the associated rate constants. Such methods, however, can not...

    Keywords: sum of square errorsleast squarespharmacokineticslineteicscompartmental modelsdirect search

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    Investigating Evidence for Climate Change (Project EDDIE)
    This multi-part activity allows students to discover the relationships between CO2 and temperature and how these variables have changed over time using real-world data.

    Keywords: Excelclimate changeGlobal Temperature Changeco2ice core data

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    Water Quality Investigation (Project EDDIE)
    This multi-part module aims to help you learn about water quality implications by understanding the variability of concentrations of nitrate in stream water through the evaluation of real-time data...

    Keywords: dataExcelwaternitrogenUSGSProject EDDIEnitrogen cycle

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    Evaluation of DEIJ practices in learning spaces
    Our Accelerating Systemic Change Network (ASCN) Working Group 5 is a group which focuses on DEIJ - Diversity, Equity, Inclusive and Justice. Taking into account the evolution of learning...

    Keywords: stemassessmentUndergraduatescienceFacultyriosDEIJASCNlearning space

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    Beyond Average: Designing for Variability with Universal Design for Learning
    Presentation on Universal Design for Learning at the 2022 SIMIODE EXPO

    Keywords: SIMIODE

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    Findings from S-JEDI Learning Community Post-Survey
    Summary of findings of the Summer 2020 S-JEDI Learning Community Post-Survey

    Keywords: evaluationscore

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    STEM Inclusive Teaching Practices Webinar Series: Universal Design for Learning
    Slides and materials for the STEM Inclusive Teaching Practices Webinar Series: Universal Design for Learning

    Keywords: webinarBIOMAAPResources @ BIOMAAPUDL

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    Simulating Cortical Rotation, Axis Induction, and Experimental Embryology in Amphibian Embryos Using Clay Models
    The study of development requires learners to understand spatially complex concepts like embryo anatomy. Embryo anatomy is dynamic over time, and it is often manipulated by researchers in...

    Keywords: developmentXenopusfertilizationEmbryologyinductionSymmetry breakingOrganizerCortical rotationPatterning

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    Learning Journal Assignment on Biofilms
    This is a learning journal assignment with constructive response questions on Biofilms which undergraduate students can complete with aid of reading a research article and listening to a podcast.

    Keywords: educationPodcastmicrobiologygenomicsUndergraduateAnalysisBioflimsLearning Journal Assignmet

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    Open and Accessible: Improving STEM OER using an accessibility framework
    Presentation on the STEM OER Accessibility Framework at the 2022 SIMIODE EXPO

    Keywords: SIMIODE

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    Reflective Writing Tools: Building Skills and Habits of Thinking in Becoming a Scientist
    Reflective writing tools are intended to help students better connect current learning experiences to prior learning, engage the role of emotion in current and future learning, and assess learning...

    Keywords: STEM educationreflective writingMentorshipambiguityindependenceperseverance

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    Pivoting Intro from Inquiry to Online
    This poster will present how inquiry-based learning experiences that were designed for face-to-face labs can be modified in a rapid pivot to online teaching.

    Keywords: plant physiologybotanyonline learninginquiry-based learningtranspirationonline labremote

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    UDL of the Day: Introducing Faculty to Universal Design for Learning through Case Activities
    Presentation by BioQUEST on providing Universal Design for Learning professional development, given at the Octboer 2019 UDL-HE Digicon

    Keywords: professional developmentUniversal Design for LearningUDLDigiconUDL-HE

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    Hands-On, Hands-Off: The Community College Genomics (ComGen) Course-Based Undergraduate Research Experience
    Science is a process of discovery where failure is inherent and iteration is necessary, yet instructors often teach the scientific process as if it is a controlled, highly supervised, confirmatory...

    Keywords: geneticssequencingDNAbacterium

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    Gotcha! Which fly trap is the best? An introduction to experimental data collection and analysis
    Collecting data from experimental observations is an important component of the scientific process; likewise, the analysis of the data is essential to understanding the observed trends and patterns...

    Keywords: data analysisexperimental designdata collectionfruit fliesfly traps

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