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Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    HITS: A network to create inquiry-based case studies that make high-throughput approaches and discovery accessible
    HITS brings together interdisciplinary groups of HT researchers and instructors to produce authentic HT case studies that can be implemented in a variety of courses, allowing students to analyze...

    Keywords: case studieshigh-throughputHITS

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    NIBLSE Incubators: A community-based model for the development of bioinformatics learning resources
    Presentation on NIBLSE incubators at the 2019 Great Lakes Bioinformatics Conference

    Keywords: bioinformaticsNIBLSEBioinformatics Educationincubators

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    NIBLSE Incubators: A community-based model for the development of bioinformatics learning resources
    Presentation given at GLBIO 2019 on NIBLSE Incubators

    Keywords: bioinformaticsNIBLSEincubators

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    HITS: A network to promote high-throughput (HT) approaches through inquiry-based case studies
    Poster on the HITS project presented at the 2018 Annual Fall Conference for the National Center for Case Study Teaching In Science.

    Keywords: case studiesbig dataHITSHigh-throughput Discovery Science & Inquiry-based Case Studies for Today’s StudentsAnnual Fall Conference for the National Center for Case Study Teaching In ScienceBuffalo case studyHigh-throughput (HT) approaches

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    ModelSim Population Biology Unit
    This resource provides rich student modeling activities and materials, teacher resources, and much more, in the realm of agent based models applied to population biology.

    Keywords: modelingsimulationmoduleEvolutioncase studycurriculumagent-based modelpopulation modeldemonstrationin-class activityPresentation

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    Citations
    Published Avida-Ed article

    Keywords: EvolutioncurriculumSelectionDigital Organisms

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    Draft Version: Energy Balance Models
    This module introduces the student to the process of mathematical modeling.

    Keywords: modulemathematical modelingbenergy balanceclimate modelDIMACSResources @ DIMACSclimatein-class activityResources @ QUBES - Teaching & Referencescienceexperiment

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    Developing Open Source Plugins for the Educational Gateway QUBEShub: Expanding Community Reach and Building a Robust Open Education Resource Ecosystem
    We present work on development of (1) a component to record, track and display the multitude of partners and professional organizations involved in the QUBES mission, and (2) a component to bring...

    Keywords: OERscience gatewaysgateways17

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    Bringing Pasteur Back to Life: Studying the Biochemistry of Yeast Fermentation Through Discussion Groups and an At-Home Lab
    This hands-on, student-centered biochemistry lesson introduces beginner biochemistry students to the techniques of effectively reading and discussing primary literature, identifying fundamental...

    Keywords: primary literatureexperimentationyeastMetabolismFermentationRespirationequilibrium

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    Exploring the Broader Impacts of Science and Society in an Active Learning Environment
    Science and society have always been intertwined. Today, scientists are increasingly encouraged to interact with the public by conducting transparent and participatory engaged scholarship, as...

    Keywords: active learningsocietyScience CommunicationscienceBroader impactsPublic engagement

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    Teaching Biodiversity with Museum Specimens in an Inquiry-Based Lab
    In response to the growth of biology datasets and broad efforts to digitize data, an increasingly important skill for science students is the management and analysis of large datasets. We designed...

    Keywords: data analysisnatural historyphylogenyBiodiversitymammalsAllen's RuleBergmann's Ruleecogeographymuseum research

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    Escape Zoom!: Reviewing Introductory Evolution Content Using an Escape Room Format
    Reviewing and integrating key concepts and learning goals at the end of a biology course can be overwhelming to students and instructors alike. Often end-of-term review sessions in preparation for...

    Keywords: Evolutionartificial selectionSpeciationextinctionsexual selectionphylogenetic treesmechanisms of evolution

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    Teaching Advanced Concepts in Regulation of the Lac Operon With Modeling and Simulation
    Success in biochemistry and other life science courses requires that students understand important biological concepts. One of these concepts is how gene regulation ensures that homeostasis is...

    Keywords: gene regulationinducible operonProkaryotic cellPhosphoenolpyruvate transferase system (PTS)

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    Starting Conversations About Discrimination Against Women in STEM
    Many scientists know about — and experience — discrimination against women. In this professional development lesson, graduate students, postdoctoral fellows, faculty, and other career...

    Keywords: identityracismGender discriminationIntersectionalityMicroagressionsSexismSexual assaultSexual harassmentTrolling

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    Electron Location, Location, Location: Understanding Biological Interactions
    Introductory Biology courses typically introduce the structure and function of biomolecules such as proteins and nucleic acids. To understand biomolecules fully, students require knowledge of...

    Keywords: hydrogen bondshydrophobicity/hydrophilicitypolar and non-polar covalent bonds

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    An Active Textbook Converts "Vision and Tweak" to Vision and Change
    Multiple reports over more than a century have documented the problems with the way introductory biology has been taught in most colleges and universities. An influential recent report, Vision and...

    Keywords: Vision and Changeactive learningintroductory biologyFlipped classroomUndergraduatecore competenciescore conceptsactive textbookcurriculum reform

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    Implementing an online module about the implications of gold mining in the Amazonian rainforest for a community college ecology course
    This online module describes the implications of gold mining in the Amazon Rainforest, introduces students to ecological concepts, and explores human-environment connections. The implementation...
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    Snapshot Serengeti Faculty Mentoring Network, Summer 2022
    The goal of our summer 2022 FMN was to develop a client-side interactive dashboard that allowed students to visualize and analyze data from the Snapshot Serengeti camera-trap research project.

    Keywords: Faculty Mentoring NetworkinteractiveSerengeti

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    Using Linear Regression Adaptation: Exploring Vector-borne diseases in an online classroom
    In this adaptation students in online classrooms will use linear regression at home and in synchronous online time to analyze real data on vector-borne diseases and explore how environmental...

    Keywords: ecologygraphingmicrobiologyqbccUnderstanding ratesCreate graphsInterpret graphsinterpret tablesConcepts in Statistics

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    Big Data, Graphs, and Prediction
    In this activity, students are introduced to graphing and modeling data in a step-wise fashion. Real data of covid-19 deaths over time are used to incrementally ask students to fit the data to...

    Keywords: epidemiologygraphingLogarithmsexponential growthqbcccovidChoosing modelsCreate graphsInterpret graphsConcepts in Statistics

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