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    Antigen presentation and cytotoxic T lymphocytes (CTLs): elucidating a common roadblock for students
    Active learning resource for pre-Nursing anatomy and physiology lecture explaining antigen presentation to CTLs and how the CTLs recognize and destroy the pathogen using Biointeractive animations...

    Keywords: Resources @ HHMI - BioInteractiveimmune systemAnatomy & PhysiologyCell communication

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    Draft Version: Energy Balance Models
    This module introduces the student to the process of mathematical modeling.

    Keywords: modulemathematical modelingbenergy balanceclimate modelDIMACSResources @ DIMACSclimatein-class activityResources @ QUBES - Teaching & Referencescienceexperiment

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    R for biologists
    An introductory guide to data analysis in R for life sciences researchers.

    Keywords: R

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    2016-Devaki-Swathi-System of Differential Equations in Prey Predator Model
    Predation relationship exists in ecological niches throughout the world. This is the species interaction which will be mathematically analyzed and embodied in this work.

    Keywords: extinctionCoevolutionpredatorLotka Volterra equationspre

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    2015-Joshi-EtAl-Optimal control of an SIR model with changing behavior through an education campaign
    We study stability analysis and use optimal control theory on the system of differential equations to achieve the goal of minimizing the infected population (while minimizing the cost).

    Keywords: SIR modelsvaccinepopulationwater treatmentsusceptibleeducation campaignminimizing costinfected

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    2015-Beckmann-Sanchez-Cache Calculus-Modeling Caches through Differential Equations
    We present cache calculus, a technique that models cache behavior as a system of ordinary differential equations, letting standard calculus techniques find simple and accurate solutions of cache...

    Keywords: discretecachecache calculus

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    2014-Rogert_Smith-Mathematical Modeling of Zombies
    Here, we use diffusion to model the zombie population shuffling randomly over a one-dimensional domain.

    Keywords: kineticsZombiezombificationinteraction times

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    2014-Niemann-Miklos-Simple Method for Estimation of Parameters in First Order Systems
    A simple method for estimation of parameters in first order systems with time delays is presented in this paper.

    Keywords: delaytime delystep response

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    1977-HI_Freedman-P_Whitman-Mathematical models of population interactions with dispersal
    A system of differential equations is proposed as a model of dispersion between two populations in habitats separated by a barrier.

    Keywords: predatorbarriertwo populationstwo habitats

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    1988-Michael Intriligator-Dagobert Brito-A Predator-Prey Model of Guerrilla Warfare
    The authors present a three variable: numbers of guerrillas, numbers of regular (government) soldiers, and size of population controlled by the guerrillas, at time t), nonlinear system of three...

    Keywords: combat modelguerrilla warfaregovernment

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    7-011-CoupledSystemLaplace-ModelingScenario
    Differential equations and Laplace transforms are an integral part of control problems in engineering systems. We consider a baby warming device.

    Keywords: transfer functionpolycarbonatebaby heatercoupled systemheating

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    5-012-LinearSystemConjecture-TechniqueNarrative
    Students go from the solution for y'(t) = k*y(t) to a natural extension to the solution conjecture of a system of two constant coefficient, homogeneous, linear differential equations introducing...

    Keywords: discovery learningconjecturesolutionsubstitution

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    1-039-StochasticPopModels-ModelingScenario
    We develop strategies for creating a population model using some simple probabilistic assumptions. These assumptions lead to a system of differential equations for the probability that a system is...

    Keywords: Probabilitypopulation dynamicsVarianceMeanstochasticdeterministic

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    3-031-SpringCost-ModelingScenario
    We assume students are familiar with overdamping and underdamping of a spring-mass-dashpot system. Students will apply this knowledge to model the interplay between spring constant, tolerance, and...

    Keywords: designunit costspring constantstatic equilibriumspring masss dashpot

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    3-072-EarthQuakePartI-ModelingScenario
    This modeling scenario considers a one-story building as a simple structure; the roof is modeled as a single point mass. Movement of the roof can be modeled similar to a mass-spring system.

    Keywords: earthquakevibrationamplituderesonanceundampedspring-mass system

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    6-075-LorenzSystemSimulation-ModelingScenario
    The Lorenz system is examined by students as a simple model of chaotic behavior or strange attractor. MATLAB code is created to find the numerical solutions of the Lorenz’ system of nonlinear...

    Keywords: chaososcillatorLorenzwaterwheelstrange attractorbifurcation effect

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    A Critical Guide to Unix
    This Critical Guide in the Introduction to Bioinformatics series briefly introduces the Unix Operating System, and provides a subset of some of the most helpful and commonly used commands....

    Keywords: NIBLSEUNIXbasic UNIX commandsGOBLETInstructorResources

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    2018-Adeniji-EtAl-InverseProblemHolling-TannerModel
    We consider the inverse problem of parameter identification of nonlinear system of ODEs for a specific case of complete information about solution of the Holling-Tanner model for finite number of...

    Keywords: goal functionabsolute error curvesinvers methodholling-Tanner model

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    2017-Fred_Adler-Mathematically Modeling Asthma
    Our Asthma models have examined how a viral infection can tip the immune system into a different state, with the potential to predispose an individual to future asthma

    Keywords: infectionasthmaimmune responserhinovirus

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    3-101-SpringMassFirstTry-NoResistance-ModelingScenario
    Students build a model based on their perceptions of what the solution should look like for a simple spring mass system with no damping.

    Keywords: frequencymassoscillationundampedspring constantspring\Single Degree of Freedom System

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