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    A Critical Guide to the PDB
    This Critical Guide in the Introduction to Bioinformatics series provides a brief outline of the Protein Data Bank – the PDB – the world’s primary repository of biological macromolecular structures.

    Keywords: NIBLSEGOBLETInstructorResources

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    A Critical Guide to BLAST
    This Critical Guide in the Introduction to Bioinformatics series provides an overview of the BLAST similarity search tool, briefly examining the underlying algorithm and its rise to popularity.

    Keywords: NIBLSEBLASTGOBLETInstructorResources

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    Bioinformatics: Food Detective – a Practical Guide
    This Practical Guide in the Bringing Bioinformatics into the Classroom series introduces the idea of computers as tools to help understand aspects of biology.
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    Using Bioinformatics to Understand Genetic Diseases: A Practical Guide
    This Practical Guide outlines a number of basic bioinformatics approaches that can be used to understand the molecular basis of genetic diseases.
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    Bioinformatics: the Power of Computers in Biology – a Practical Guide
    This Practical Guide in the Bringing Bioinformatics into the Classroom series introduces simple bioinformatics approaches for database searching and sequence analysis.

    Keywords: NIBLSEGOBLET

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    Atlas of Black Scholarship for Inclusive and Racially Diverse STEM Curricula – Volume I
    The contributions of Black scientists to the advancement of STEM are poorly represented in course materials. Here, we provide an Atlas of Black Scholarship to help Life Sciences and Chemistry...

    Keywords: BLACK SCIENTISTS IN STEMRACIALLY-RESPONSIVE PEDAGOGYBIOLOGY AND CHEMISTRY EDUCATIONDIVERSITY IN STEM CURRICULUM

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    Engaging students in data exploration using digital biodiversity databases: BLUE Data Network
    Slides for BLUE presentation at 2020 BIOME Institute: Cultivating Scientific Curiosity

    Keywords: undergraduate researchnatural historyBiodiversitynatural history collectionsbiodiversity collectionsBLUEbiodiversity literacy

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    GEA Introductory lesson on BLAST
    The "Introduction to BLAST using Human Leptin" exercise aims to introduce students to the use of the Basic Local Alignment Search Tool (BLAST) to identify related sequences and compare similarity...

    Keywords: geneticsProbabilitydatabasebioinformaticsphylogenetic analysisgenomicsBLASTProtein sequenceSimilarity searches

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    Piwi Matters
    This case focuses on understanding structure and function relationships in Piwi, a protein that is critical for germline stem cell function and development of eggs in the fruit fly ovary.

    Keywords: Stem cellsmolecular visualization and analysis3D protein structure /function analysisPiwiPDBMolecular Case Study

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    Demography from "virtual cemeteries"
    This module is a modification of the Lanza module in TIEE Volume 8. Rather than requiring students to visit cemeteries outside of class, this modification has students collect data from online...

    Keywords: ecologyResources @ ESA - TIEEdemographysurvivorshiplife tables

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    Following the Data
    The video and exercise provides insight into how researchers are using digital data resources to investigate biodiversity in prairie fen wetlands.

    Keywords: data in the classroomprocess of sciencebiodiversity informatics

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    Diving into Deep Sea Data
    A module that combines NOAA's Okeanos Explorer and the iDigBio Portal to explore the deep sea!

    Keywords: Querying databasesremote sensingnatural history collectionsfishesscientific name5ESpeciesichthyologydeep sea

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    Communicating with Data: Infographic with Digital Data
    Working collaboratively in teams of 2-4 researchers, students engage in targeted projects to address critical information and research needs using digital biodiversity data.

    Keywords: databasesdata in the classroomundergraduate researchdigital collectionscourse-based research experiences (CUREs)biodiversity collections

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    GBIF Tutorial - BLUE Resource
    A user guide and video instructions for GBIF

    Keywords: Querying databasesdatabasedata in the classroombiodiversity informaticsbiodiversity collections

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    iDigBio Tutorial - BLUE Resource
    A user guide and video instructions for iDigBio

    Keywords: databasesQuerying databasesdata in the classroombiodiversity informaticsbiodiversity collections

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    Arctos Tutorial - BLUE Resource
    A user guide and video instructions for Arctos

    Keywords: databasesdata in the classroombiodiversity informaticsbiodiversity collections

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    Following the Data - PowerPoint Addition to Module
    This PowerPoint presentation guides instructors and students through the key background information for the module.
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    Data is the New Science - Modified and combined with Following the Data Module
    In this module, students will be introduced to some emerging biodiversity data resources. They will be asked to think critically about the strengths and utility of these data resources and apply...

    Keywords: data in the classroombiodiversity informaticsnatural history collection

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    Databases: A Study of Influenza
    This lesson introduces the student to the Influenza Research Database. Students will select Influenza genome sequences to see how they are related. Students tests hypotheses about evolutionary...

    Keywords: Bioinformatics EducationBioinformatics and Genomicsmolecular evolutionInfluenza

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    Introduction to Genome Annotation
    This exercise is an adaptation of the Annotation Lesson by Rosenwald et al. It introduces the use of bioinformatics tools to extract information from genome databases. It is a basic lesson on...

    Keywords: microbiologyGenome annotationBioinformatics EducationBioinformatics and Genomics

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