You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Avida-ED
    Avida-ED is an award-winning educational application developed at Michigan State University for undergraduate biology courses to help students learn about evolution and scientific method.

    Keywords: simulationEvolutionbiologyscientific methodResources @ QUBES - Softwaredigitalhypotheses

    2600

    views

    408

    downloads

    0

    comments

    0

    adaptations

    2010-Soetaert-EtAl-Solving Differential Equations in Rd SIMIODE Draft (5)
    Here we give a brief overview of differential equations that can now be solved by R.

    Keywords: solving

    90

    views

    38

    downloads

    0

    comments

    0

    adaptations

    Are you learning R? Suggestions to help you as you learn.
    Learning how to code and analyze data in R is an important skill. Olivia Tabares and the Ecological Forecasting Education Working Group created this resource to encourage individuals who are...

    Keywords: R code

    582

    views

    127

    downloads

    0

    comments

    0

    adaptations

    R Subsetting Tutorial
    The students will practice manipulating data to add to or extract subsets of specific values, rows, columns, or subsets of data contained in existing data files.
    1166

    views

    488

    downloads

    0

    comments

    0

    adaptations

    Robot vs. Disease: Using CellProfiler to model biomedical research in your classroom
    Resource from the 2015 BioQUEST Summer Workshop

    Keywords: image analysisCellProfilerfluorescence microscopymicroscopycellular analysis

    1554

    views

    439

    downloads

    0

    comments

    0

    adaptations

    Using QIIME to Interpret Environmental Microbial Communities in an Upper Level Metagenomics Course
    Metagenomics is rapidly evolving due to advances in sequencing technologies and bioinformatics, but without proper training to interpret these datasets, student understanding remains limited. Aimed...

    Keywords: microbiome

    1405

    views

    286

    downloads

    0

    comments

    0

    adaptations

    Downloading and Visualizing Project Data from the iNaturalist Database
    In this activity you will learn how to create a query, export, and download data from iNaturalist; load data into R; explore pollinator-plant interactions with R, and create heat map, bipartite,...

    Keywords: data visualizationplantsPlant EcologyPlant-insect interactionsnetwork#iNaturalistBLUEpollinators

    99

    views

    64

    downloads

    0

    comments

    0

    adaptations

    Module M.1 R basics for data exploration and management
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

    744

    views

    451

    downloads

    0

    comments

    0

    adaptations

    Importing Data into R
    This short swirl lesson on importing data is designed to 1) get a basic understanding in how tables are read into R and some common issues and 2) develop an individual set of instructions for...

    Keywords: teaching with technologySwirl

    1407

    views

    870

    downloads

    0

    comments

    0

    adaptations

    Teaching R with Swirl
    Session presentation on using Swirl, an interactive platform for learning and teaching R in the R console

    Keywords: Rdata analysisprogrammingSummer Workshop 2018Swirl

    2370

    views

    330

    downloads

    0

    comments

    0

    adaptations

    Chapter 10: Two-way analysis of variance
    Biostatistics Using R: A Laboratory Manual was created with the goals of providing biological content to lab sessions by using authentic research data and introducing R programming language....

    Keywords: biostatisticsR programming language

    882

    views

    489

    downloads

    0

    comments

    0

    adaptations

    Chapter 8: Comparing two means: the t-test
    Biostatistics Using R: A Laboratory Manual was created with the goals of providing biological content to lab sessions by using authentic research data and introducing R programming language....

    Keywords: biostatisticsR programming language

    985

    views

    1838

    downloads

    0

    comments

    0

    adaptations

    Chapter 7: The normal distribution
    Biostatistics Using R: A Laboratory Manual was created with the goals of providing biological content to lab sessions by using authentic research data and introducing R programming language....

    Keywords: biostatisticsR programming language

    936

    views

    524

    downloads

    0

    comments

    0

    adaptations

    Chapter 6: Population proportions and the binomial distribution
    Biostatistics Using R: A Laboratory Manual was created with the goals of providing biological content to lab sessions by using authentic research data and introducing R programming language....

    Keywords: biostatisticsR programming language

    931

    views

    551

    downloads

    0

    comments

    0

    adaptations

    Chapter 5: Hypothesis testing
    Biostatistics Using R: A Laboratory Manual was created with the goals of providing biological content to lab sessions by using authentic research data and introducing R programming language....

    Keywords: biostatisticsR programming language

    993

    views

    580

    downloads

    0

    comments

    0

    adaptations

    Chapter 4: Probability distributions
    Biostatistics Using R: A Laboratory Manual was created with the goals of providing biological content to lab sessions by using authentic research data and introducing R programming language....

    Keywords: biostatisticsR programming language

    903

    views

    497

    downloads

    0

    comments

    0

    adaptations

    2003-Knorrenschild-Gross-Text Books on Mathematical Modeling in Biology
    Text Books on Mathematical Modeling in Biology Compiled from the Internet by Michael Knorrenschild,

    Keywords: biologyMathematical Biologytextbooktext

    151

    views

    40

    downloads

    0

    comments

    0

    adaptations

    Using Images of Foraging Leaf-Cutter Ants to Teach Linear Regression
    This lesson offers students a realistic, open-inquiry research experience, even when lab or field research is not possible. We first introduce students to leaf-cutter ants and how they forage. Then...

    Keywords: linear regressionexperimental designPlant-insect interactionsSymbiosisForaging behavior

    1281

    views

    406

    downloads

    0

    comments

    0

    adaptations

    REMNet Tutorial, R Part 3: Creating Alpha Diversity Plots in R 5.2.19
    Video on creating alpha diversity plots in R from the Research Experiences in Microbiomes Network

    Keywords: VideoMicrobiology EducationR programming languagemicrobiomesCoastal wetlandsmanagementnortheastsea-level risesalt marshresearch in the classroomREMNeturban microbiomes

    1287

    views

    433

    downloads

    0

    comments

    0

    adaptations

    Evolutionary Ecophysiology swirl lesson
    Uses swirl to walk students through how to use R and analyze their own data.
    974

    views

    245

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search