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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Learning Frameworks Aid Goal-oriented Course Design
    As a new instructor it can be hard to know where to begin. Thankfully, CourseSource's learning frameworks (https://www.coursesource.org/courses) shaped my approach to teaching as a first year...

    Keywords: backward designlearning goalscourse design

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    Supplemental Materials for Beagle Investigations Return with Darwinian Data Manuscript
    Supplement 1 contains an example laboratory exercise for introducing the BIRDD resources. Supplement 2 contains a list of web accessible data resources to supplement the existing BIRDD resources.

    Keywords: Galapagosdata on darwins finches

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    Discovery and Invention: A Reflection on Representation in Science
    Despite increased awareness of the lack of equity and inclusion in the STEMM classroom, lessons on DEI topics are treated as separate to the scientific curriculum being taught. Rarely are...

    Keywords: EquityDiversity and Inclusionantiracism

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    The Impact of Diet and Antibiotics on the Gut Microbiome: Distance Education Variant
    The goal of this article is to describe a variation of an active learning exercise that was previously published by the same author under a similar title. The variation describes modifications...

    Keywords: microbiomenutritionbacterial metabolitesgut bacteriahost response

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    REMNet: Online Resources 5.3.19
    Video on online resources for studying microbiomes from the Research Experiences in Microbiomes Network

    Keywords: VideoMicrobiology EducationmicrobiomesMicrobiome researchresearch in the classroomREMNet

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    Analyzing Data on Behavioral and Immunological Effects of Inflammation in Mice
    In this activity, students will learn about behavioral and immunological responses to a bacterial infection. The activity emphasized the host’s responses rather than bacterial manipulation of the...

    Keywords: Vision and Changedata analysisImmunologybehaviorphysiologyinflammationinterdisciplinary educationAntigenmouseImmunoReachSicknessleukocyteneutrophilLipopolysaccharideacute phase response

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    BIOME 2024 Workshop: “But we don’t teach ecology!”
    OCELOTS modules are open-access case studies in tropical ecology that promote active learning, quantitative skills, and systems thinking. This workshop is the prelude to a Fall FMN for adapting...

    Keywords: International researchtropical biologyBIOME 2024

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    Riverbird distributions and habitat use
    Riverbirds are widespread, use diverse riparian habitats, and respond rapidly to changing conditions. Students can apply riverbird data to evaluate hypotheses about these responses, while gaining...

    Keywords: logistic regressionHabitat selectionRiver Field Studies NetworkWaterfowl raptorkingfisherheronfocal speciesmonitorriverbank

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    2015-Sebesyen-Farago-Invasive Species Model with Linear Rat Harvesting on Easter Island
    In this paper we suggest a natural modification of this model. Namely, we will investigate the case where the amount of the rats is decreased due to some external factor, e.g., exterminations by...

    Keywords: carrying capacityharvestEaster Islandinvasie especiesratsRoughgarden theorem.

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    Using Grassy Narrows in a Live Classroom with Clicker Questions and Interactive Histogram: Sampling Distributions, Probability, and Hypothesis Testing
    Students are introduced to concepts of sampling distributions, p-values, and hypothesis testing. Using both simulated and real data for methylmercury level in fish populations, students will...

    Keywords: statisticsmathematicsbiostatisticsecologybiologygraphingp-valuest-testshypothesis testingin-class activityZoologymercury biogeochemistrybiostatistics - generalfish populationqbccBiogeochemical cyclesInterpret graphsConcepts in StatisticsElementary Hypothesis TestingMethylmercurydamsBioaccumulationtraditional dietsmercurymercury poisoningnative peopleindigenous populationCanadahydroelectricexplaining statisticsusing statisticsMake probability calculations

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    Ripped from the Headlines! Creating Case Studies from Primary Literature.
    Poster on using case studies developed from primary literature presented at the 2018 QUBES/BioQUEST Summer Workshop

    Keywords: case studyprimary literatureSummer Workshop 2018

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    Balancing Chemical Equations Using Matrix Algebra
    This Excel workbook introduces using matrix algebra to balance chemical reactions. The workbook allows the user to set up their own matrices for chemical reactions involving 2-7 elements.

    Keywords: chemical reactionsInverse matrix methodmatrix algebra

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    Translating Co-Translational Translocation
    Understanding the process of proteins targeting to specific locations within a cell is a fundamental part of cell biology. Synthesis of proteins by co-translational translocation, which also...

    Keywords: Topologyco-translational translocationendoplasmic reticulumprotease protection assaysecretory proteinssignal sequencetransmembrane proteins

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    How Many Squirrels Are in the Shrubs? A Lesson Plan for Comparing Methods for Population Estimation
    Estimating the population sizes of animals is a key skill for any student interested in ecology, conservation, or management. However, counting animals in natural habitats is difficult, and the...

    Keywords: population ecologywildlife managementpopulation estimationsciuridaeSquirrel-Net

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    DIGging Into Data and getting the credit
    Presentation on using and adapting OER data-centric resources

    Keywords: data2019 QUBES/BioQUEST Summer Workshopdata-centric teachingoer life cycle

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    Deme 2.0
    This workbook simulates the population genetics of a single gene with two alleles. It can simultaneously model up to three local populations, which may differ in their selection coefficients.

    Keywords: population geneticsGenetic DriftNatural Selection

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    2011-Mandal-EtAl-Mathematical models of malaria
    The first aim of this article is to develop, starting from the basic models, a hierarchical structure of a range of deterministic models of different levels of complexity. The second is to...

    Keywords: epidemiologytransmissionhost-parasitemalariaRoss model

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    Gotcha! Which fly trap is the best? An introduction to experimental data collection and analysis
    Collecting data from experimental observations is an important component of the scientific process; likewise, the analysis of the data is essential to understanding the observed trends and patterns...

    Keywords: data analysisexperimental designdata collectionfruit fliesfly traps

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    Teaching RNAseq at Undergraduate Institutions: A tutorial and R package from the Genome Consortium for Active Teaching
    Next-generation sequencing is radically changing the study of biology, but there are currently few resources aimed at teaching the required laboratory and data-analysis skills to undergraduate...

    Keywords: statisticsbioinformaticsRNAseqgene expressioncomputer programming

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    My Fish Tank: An Active Learning Activity for Bacterial Nitrogen Metabolism
    This active learning activity introduces students to the second part of the nitrogen cycle, nitrification. In terrestrial and aquatic environments, bacteria from the Nitrosomonas and Nitrobacter...

    Keywords: nitrogen cyclenitrificationnitrifying bacteria

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