QUBES will have scheduled maintenance work beginning on Wednesday, June 26, 2024, 4pm ET/1pm PT. The platform will operate normally for most of the day, except for an extended outage period lasting no more than 4 hours. All running tool sessions will expire during the maintenance window. Please plan accordingly and we do apologize for any inconvenience. close

You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Cells of the Immune System
    This tutorial provides an overview of the immune system, concentrating on the roles played by B and T lymphocytes, and on the antigen-presentation system.
    1290

    views

    201

    downloads

    0

    comments

    0

    adaptations

    2017-Allali-EtAl-Mathematical Modeling of the Adaptive Immune Responses in the Early Stage of the HBV Infection
    The aim of this paper is to study the early stage of HBV infection and impact delay in the infection process on the adaptive immune response, which includes cytotoxic T-lymphocytes and antibodies.

    Keywords: logisticHBV infectionadaptive immunie responseT-lymphocytes

    97

    views

    59

    downloads

    0

    comments

    0

    adaptations

    Infectious Chocolate Joy with a Side of Poissonian Statistics: An activity connecting life science students with subtle physics concepts
    Lesson on what it means for biological processes to be Poissonian, published in CourseSource

    Keywords: quantitative biologybioinformaticsmicrobiologyphysicsNIBLSEHIVCourseSourcemultiplicity of infectionPoisson Distribution

    1295

    views

    268

    downloads

    0

    comments

    0

    adaptations

    Antigen presentation and cytotoxic T lymphocytes (CTLs): elucidating a common roadblock for students
    Active learning resource for pre-Nursing anatomy and physiology lecture explaining antigen presentation to CTLs and how the CTLs recognize and destroy the pathogen using Biointeractive animations...

    Keywords: Resources @ HHMI - BioInteractiveimmune systemAnatomy & PhysiologyCell communication

    1024

    views

    402

    downloads

    0

    comments

    0

    adaptations

    Using the IEDB to Predict Proteasomal Cleavage Events and T-cell Epitopes
    Research experiences provide a valuable view into the world of science and a great way to explore new fields and careers while developing critical thinking skills. The development and maintenance...

    Keywords: biologydatabaseImmunologydata sciencebioinformaticsBiotechnologyt-cellengineeringantibodyBioengineeringAntibody EngineeringlymphocytesProteinNetChopepitopeIEDBB-cellProteasomeProteasomal Cleavage

    831

    views

    155

    downloads

    0

    comments

    0

    adaptations

    Spreadsheet Tutorial 4: t-Test
    Calculate t-values and perform t-tests using built-in functions.

    Keywords: Resources @ HHMI - BioInteractiveScientific ProcessStatistics and MathScientific Methodology

    1093

    views

    312

    downloads

    0

    comments

    0

    adaptations

    Infectious Chocolate Joy with a Side of Poissonian Statistics: An activity connecting life science students with subtle physics concepts
    Introductory physics courses are required for many programs in the life sciences, yet traditional curricula fail to help students meaningfully connect physical concepts with biological...

    Keywords: quantitative biologyHIVmultiplicity of infectionPoisson DistributionPhysics for biologists

    1318

    views

    136

    downloads

    0

    comments

    0

    adaptations

    2011-W_Wood-Squigonometry
    The differential equations used to define a unit circle, namely x’(t) = - y(t), y’(t) = (t), x(0) = 1, y(0) = 0 are generalized to produce interesting functions which...

    Keywords: Trigonometric Functionscirclesquigonometryinverse functiontrigonmetry

    113

    views

    49

    downloads

    0

    comments

    0

    adaptations

    2011-W_Wood-Squigonometry
    The differential equations used to define a unit circle, namely x’(t) = - y(t), y’(t) = x(t), x(0) = 1, y(0) = 0 are generalized to produce interesting functions which...

    Keywords: TrigonometryTrigonometric Functionsparametric equationscirclesinecosinesquigonometryinverse function

    116

    views

    25

    downloads

    0

    comments

    0

    adaptations

    6-017-OncolyticViruses-ModelingScenario
    Students explore oncolytic virotherapy using systems of differential equations and numerical simulations.

    Keywords: cancercancer-immune dynamicsimmune suppressor drugoncolytic virusvirotherapy

    322

    views

    85

    downloads

    0

    comments

    0

    adaptations

    Chapter 8: Comparing two means: the t-test
    Biostatistics Using R: A Laboratory Manual was created with the goals of providing biological content to lab sessions by using authentic research data and introducing R programming language....

    Keywords: biostatisticsR programming language

    960

    views

    1818

    downloads

    0

    comments

    0

    adaptations

    1-009-ICUSpread-ModelingScenario
    We offer students the opportunity to model the percentage of voluntary nonprofit hospitals in the United States with Intensive Care Units during the period of 1958-1974.

    Keywords: logisticsum of square errorsIntensive Care Unithospitalspread

    167

    views

    98

    downloads

    0

    comments

    0

    adaptations

    Garden peas and cabbage plants: A short 'de-simplified genetics' activity
    Are plants of genotype T/T tall? Are those of genotype t/t short? Let's find out in this short activity entirely based on a segment of: Smith's (2014) "It’s Not Your Grandmother’s Genetics Anymore!"

    Keywords: geneticsintroductory biologyclickersenvironmentplantsin-class activitygenotypephenotypeMendel

    175

    views

    55

    downloads

    0

    comments

    0

    adaptations

    2008-Yang-EtAl-Differential Equation Model of HIV Infection of CD T-Cells with Delay 
    Abstract: An epidemic model of HIV infection of CD4+ T-cells with cure rate and delay is studied. We include a baseline ODE version of the model, and a differential-delay model with a discrete time...

    Keywords: virusT cellsHopf bifurcationendemic equilibrium

    91

    views

    33

    downloads

    0

    comments

    0

    adaptations

    Flatten the Curve Course Module
    JavaScript isn't enabled in your browser, so this file can't be opened. Enable and reload.Some Word features can't be displayed in Google Docs and will be dropped if you make changesView...
    846

    views

    281

    downloads

    0

    comments

    0

    adaptations

    3-015-StyrofoamBallFall-ModelingScenario
    We are given data on a falling Styrofoam ball and we seek to model this motion.

    Keywords: footballresistancegravityfalling bodysum of square errorsNewton's Second Law of Motionsum of forcesstyrofoam

    177

    views

    106

    downloads

    0

    comments

    0

    adaptations

    5-025-SaltCompartments-ModelingScenario
    Model a phenomena in which salt mixtures from two tanks are mixed using several strategies.

    Keywords: compartmentsalttanks

    172

    views

    112

    downloads

    0

    comments

    0

    adaptations

    Spreadsheet Data Analysis Terms and Shortened Tutorial 4
    Introductory students are asked to learn terms for descriptive statistics and complete a matching exercise. Tutorial 4 was shorted to just the full calculations of t values.

    Keywords: Scientific ProcessStatistics and MathScientific Methodology

    1217

    views

    549

    downloads

    0

    comments

    0

    adaptations

    1-025-MixingItUp-ModelingScenario
    Students build three different models for levels of salt in a tank of water and at each stage the level of complexity increases with attention to nuances necessary for success.

    Keywords: compartmentsalttankmixing

    178

    views

    118

    downloads

    0

    comments

    0

    adaptations

    2002-Nelson-Perelson-Mathematical analysis of delay differential equations models of HIV-1 infection
    We develop and analyze a set of models that include intracellular delays, combination antiretroviral therapy, and the dynamics of both infected and uninfected T cells.

    Keywords: infectionHIVT cells

    141

    views

    42

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search