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    Screen Casts for Foundations of Bioinformatics at UCSD
    Collection of videos developed by Barry Grant at UCSD for his course, BGGN-213
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    How do we do Bioinformatics?
    A description of the computational setup for “Foundations of Bioinformatics” (BGGN-213) See: http://thegrantlab.org/bggn213/
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    What is Bioinformatics?
    This second screencast introduces bioinformatics, details major leaning goals & expectations of BGGN-213 and outlines the areas of bioinformatics covered in ...
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    Foundations of Bioinformatics (BGGN-213)
    This first short screen-cast introduces “Foundations of Bioinformatics” (BGGN-213) course at UCSD and covers some pre-course logistics.
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    ProteinPhysiochemistry
    How to determine physiochemical features of proteins using ExPasy Protpram, SOSUI server, and PSortB programs.
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    LEAGSEA
    How to perform Leading Edge Analysis in Gene Set Enrichment Analysis by Broad Institute
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    Using Phyre2
    How to use Phrye2 and 3DLigandSite to computationally predict protein and active site structure and binding partners (substrates/cofactors/coenzymes).
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    Simple Heat Maps with Morpheus
    Learn how to load an Excel file of raw data into Morpheus and change between relative and global scales.
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    Choose Your Own Adventure: Control a Wildlife Disease Epidemic
    This educational game allows teams of students to try to control a simulated epidemic in United States snake populations using their epidemiological and ecological knowledge. It combines a "choose...

    Keywords: educational game

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    Analysis of Microbiomes Using Free Web-Based Tools in Online and In-Person Undergraduate Science Courses
    Our understanding of microbiomes, or the collection of microorganisms and their genes in a given environment, has been revolutionized by technological and computational advances. However, many...
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    UNR Bioinformatics Videos
    Two videos developed by Pedro Miura about bioinformatics at UNR
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    Using Images of Foraging Leaf-Cutter Ants to Teach Linear Regression
    This lesson offers students a realistic, open-inquiry research experience, even when lab or field research is not possible. We first introduce students to leaf-cutter ants and how they forage. Then...
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    Fungus Among Us!
    This game introduces the idea of how fungi and plants can work together in a symbiotic relationship.
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    Number Sense
    In this activity, students demonstrate their own innate number sense by playing an online game that asks them to estimate quantities that are flashed on screen for only milliseconds. Research...
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    Beanbag Toss (Grades 6-8)
    The classroom lesson presents students with the task of developing a fair--yet challenging--beanbag toss game.
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    2006-Salem-Abudiab-Labview-An Interactive Teaching Tool for a Differential Equations Class
    It is evident that computer based learning has become an essential part of education systems. It provides animation and interactive processes that are not possible with textbooks.
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    Using QIIME to Interpret Environmental Microbial Communities in an Upper Level Metagenomics Course
    Metagenomics is rapidly evolving due to advances in sequencing technologies and bioinformatics, but without proper training to interpret these datasets, student understanding remains limited. Aimed...

    Keywords: microbiome

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    Learning R for Biologists: A Mini Course Grab-Bag for Instructors
    As biology becomes more data driven, teaching students data literacy skills has become central to biology curriculum. Despite a wealth of online resources that teach researchers how to use R, there...
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    Web Popgen
    A Hardy-Weinberg simulation program.
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    Data Analysis for the Life Sciences
    An online stats book written completely in R
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