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    Reflective Writing Adapted for Non-Majors
    This activity introduces the research showing a benefit of reflective writing, and then uses a modified version of the prompt from Park et al. to provide practice. The prompts have been modified...

    Keywords: writingreflective writingmath attitudesResources @ BIOMAAP

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    Measuring the Health of the Earth Using the Theory of Island Biography
    This module uses a variety of available datasets to explore methods of calculating biodiversity and measuring landscape as well as the relationship between those.

    Keywords: moduleEvolutionecologycollege algebraearth scienceOceanographygeophysicalResources @ DIMACSResources @ QUBES - Teaching & Reference

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    Geology
    In this video, we discuss how studying the rocks and minerals around us can tell us about the history of the planet. We also discuss what makes a scientific law and how those laws are applied in...

    Keywords: videosgeologyScience Forwardproxiesscientific law

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    Is everything bigger in Texas? Introduction to Statistics with the Rock Pocket Mouse (Chaetodipus intermedius)
    Natural history museums often contain large collections of the same species and therefore, are a resource for studying intraspecific variation. This module uses 172 images of rock pocket mouse...

    Keywords: statisticsnatural history museumsdistance learningStudy Designintraspecific variation

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    2015-Boggess-EtAl-Mathematical Modeling in Ecology - Simulating the Reintroduction of the Extinct Passenger Pigeon
    To determine under which conditions a Passenger Pigeon could survive a reintroduction into a natural habitat, we used two types of models.

    Keywords: simulationagent-based modelingallee_effectPassenger Pigeonsforest envirnomentHolling Type III functional responseBio-energeticstree distributions

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    2012-Nokkaew-EtAl-Estimation of Algae Growth Model Parameters by a Double Layer Genetic Algorithm
    This paper presents a double layer genetic algorithm (DLGA) to improve performance of the information-constrained parameter estimations.

    Keywords: optimizationalgae growthgenetic algorithmssimulated dataconvergence of parameters

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    2006-Matt_MacWilliams-Developing ODEs to Describe the Motion of a Paper Helicopter
    This paper attempts to create a model that describes the motion of a paper helicopter using engineering, physical and statistical knowledge.

    Keywords: experimental designhelicopter

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    1989-R_Blickhan-Spring Mass Model For Running-Hopping
    A simple spring—mass model consisting of a massless spring attached to a point mass describes the interdependency of mechanical parameters characterizing running and hopping of humans as a function...

    Keywords: spring massjumpjumping

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    2014-C_W_Groetsch-S_A_ Yost-Vertical Projection_in_a_Resisting_Medium_Revelations_on_Observations_of_Mersenne
    This article, inspired by a 17th-century woodcut, validates empirical observations of Marin Mersenne (1588–1648) on timing of vertically-launched projectiles for a general mathematical model of...

    Keywords: resistanceprojectile motionprojectilefluidMersenne

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    3-064-GearTrain-ModelingScenario
    Students model an input-output mechanical system of gears with a second order, non-homogeneous, ordinary differential equation with constant coefficients. The model incorporates friction and...

    Keywords: frictiongearspur geargear traintorquegear ratioangular accelerationangular velocitymoment of inertiadouble reduction gear

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    5-015-RunnersSynchronize-ModelingScenario
    In this modeling scenario we practice finding and classifying equilibria of a one-variable differential equation. We do this in the context of a phase model which is often a simpler way of studying...

    Keywords: predatorAutonomous equationsoscillationcoupled oscillatorsynchronyrunnerpreyKuramato model

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    3-069-HeatInBar-ModelingScenario
    The temperature distribution along a uniform slender bar due to conduction and convection is investigated through experimental, analytical, and numerical approaches.

    Keywords: heat transferexperimentconductionconvectionboundary conditionsfinite volume method

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    4-023-MysteryCircuit-ModelingScenario
    Students to build a system of differential equations which model a circuit. We give each student a unique input voltage frequency parameter and ask for system response (gain) to that input as a...

    Keywords: filterscircuitRLC circuitKirchhoffvoltagegaindriver

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    Fitting Exponential and Logistic Growth Models to Bacterial Cell Count Data
    In this activity, students will model a noisy set of bacterial cell count data using both exponential and logistic growth models. For each model the students will plot the data (or a linear...

    Keywords: modelingdata analysislinear regressiongraphingExponentsoptimizationcalculusInterpreting GraphsFunctionsqbccCellular and Molecular BiologyChoosing modelsUnderstanding ratesConcepts in Statisticsmeasurementsmanipulating equationscreating graphsExponential and Logarithmic Functionsinterpreting tables

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    Wind and Ocean Ecosystems (Project EDDIE)- adapted to provide greater autonomy for students in an upper level class
    This module adaption focuses on the interplay between winds, ocean upwelling, and marine productivity. Students are able to select and download their own data and compare results among different...
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    Developing a phylogram from computational resources.
    This laboratory module, published on CourseSource, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    Keywords: phylogeneticsbioinformaticssequencingFASTANCBINIBLSEalgorithmsBLASTmultiple sequence alignmentsequence similarityneighbor-joining distance matrixCourseSourcephylogrampercent identity matrix

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    Chapter 1: Introduction to R and RStudio
    Biostatistics Using R: A Laboratory Manual was created with the goals of providing biological content to lab sessions by using authentic research data and introducing R programming language....

    Keywords: biostatisticsR programming language

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    Social Distancing Simulation in NetLogo
    A NetLogo simulation that shows the effects of social distancing on the spread of infectious disease.
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    Open QUBES - A Faculty Use Case of Open Practice
    QUBES has been a critical component of my continued success as an open scholar. This poster details several of these outcomes with my lived experience working with QUBES as an Open scholar as a...

    Keywords: QUBESopen community

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    Ferns are Everywhere
    Using spatial fern population data in hypothesis testing

    Keywords: hypothesis testingNumbers Countspatial distribution

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