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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Identifying Groundwater Discharge Dynamics into Stream Habitat Assessments
    Groundwater contributions are overlooked in many habitat assessments, even though their ecological and water quality importance to streams has been broadly recognized. This lab encourages students...

    Keywords: landscape ecologyriver systemsRiver Field Studies NetworkGroundwater - Surface Water Exchangegroundwater seepsstream temperature

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    Field sketching, geomorphic data, and the power of perspective
    Sketching is a powerful tool to capture observations about the landscape and preserve a picture of a field site at a particular time. At the same time, our perspectives, be they disciplinary,...

    Keywords: sketchingstream dischargedata collectionGeomorphologyRiver Field Studies Networkgrain sizeperspective

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    Applying Universal Design for Learning (UDL) Principles to Case Studies
    This is a presentation for the 2022 BIOME meeting.
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    Investigating human impacts on Southeastern US stream ecology using R
    Adaptation of the "Investigating human impacts on stream ecology: Scaling up from Local to National with a focus on the Southeast" specifically to focus on self-paced R code instruction
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    Exploring global reef health and human population using correlation and simple linear regression
    In this lesson, students will explore the relationship between reef cover and human disturbance. Students will manipulate a large dataset and perform normality tests, data transformations,...

    Keywords: population dynamicshumanlinear regressionconservationcorrelationRestorationcoral reefs

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    Evolution of Caffeine Biosynthesis Enzymes
    This case focuses on exploring why plants make secondary metabolites like caffeine and how the enzymes required for making caffeine evolved.

    Keywords: Evolutioncaffeinemolecular visualization and analysisenzymesPDBMolecular Case Study

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    Piwi Matters
    This case focuses on understanding structure and function relationships in Piwi, a protein that is critical for germline stem cell function and development of eggs in the fruit fly ovary.

    Keywords: Stem cellsmolecular visualization and analysis3D protein structure /function analysisPiwiPDBMolecular Case Study

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    Cleaning Data with R and the Tidyverse in Swirl
    The overall goal is to help students learn common data cleaning procedures on a dataset once they’ve collected measurements and before they are able to start their analysis. This swirl lesson is...

    Keywords: Rdata analysisdata manipulationRStudioManagement Of DataSwirl

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    Biodiversity research using digitized, internet-based natural history collections
    Collections based research is a critical tool for organismal biology and biodiversity research. Yet natural history collections have a complicated past. This multi-class module examines the...

    Keywords: natural historycollectionsdigital resourcesOERBiodiversitynatural history museumsdigital collectionsbirdsBiodiversity Collections Network (BCoN)BLUE

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    Citations
    Published Avida-Ed article

    Keywords: EvolutioncurriculumSelectionDigital Organisms

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    Links to Avida-ED spreadsheets for Active LENS and BioQUEST 2018
    Avida-ED materials and resources for Active LENS and BioQUEST 2018.

    Keywords: avida-edSummer Workshop 2018

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    Cell Collective
    Session presentation on an easy-to-use software, that makes this computational modeling approach accessible to any student and instructor

    Keywords: computational modelSummer Workshop 2018

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    Developing hands-on activities linking plankton and computational thinking
    Poster on computational thinking as a method to help address complex problems, create systems, and understand behaviors presented at the 2018 QUBES/BioQUEST Summer Workshop

    Keywords: computational thinkingplanktonSummer Workshop 2018

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    Quantifying The Drivers and Impacts of Natural Disturbance Events – The 2013 Colorado Floods
    This lesson focuses on ways that scientists identify and use data to understand ecological disturbance events using data from five public datasets. The main lesson focused on interpretation of...

    Keywords: data in the classroomdata interpretationprecipitationstream dischargePalmer Drought Severity IndexlidarEcological Disturbancedisturbance ecologyHigh School

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    A flexible, multi-week approach to plant biology - How will plants respond to higher levels of CO2?
    To help introductory biology students understand how plants will respond to higher levels of CO2, we have created a multi-week module consisting of a series of four related laboratory lessons....

    Keywords: statisticsplantsphotosynthesiscarbon dioxidecommunicating sciencegroup workResource AllocationRespirationStomata

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    Animal Behaviour Case Study Lessons in Communication, Migration, and Parental Care Using the Jigsaw Approach
    Animal behaviour courses integrate concepts across biological disciplines and are particularly well suited for collaborative, student-focused teaching...

    Keywords: case studycommunicationprimary literatureanimal behaviorjigsawParental CaremigrationAnimal BehaviourProximate mechanisms

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    Unwrapping Enzyme Kinetics
    Enzyme rates and kinetics are key components used by biochemists to understand how enzymes function. However, students often find it difficult to understand how these experiments are performed and...

    Keywords: kineticsstructure-functionenzymescatalysis

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    Student-Led Research; Integrating Citizen Science & Field Methodology in the Ecology Classroom
    Targeting undergraduate students in lower-division ecology courses, this module guides students through authentic research. The purpose of this project is to provide hands-on research experience to...

    Keywords: undergraduate researchcitizen sciencecamera trap

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    Quantifying The Drivers and Impacts of Natural Disturbance Events – The 2013 Colorado Floods
    This lesson focuses on ways that scientists identify and use data to understand ecological disturbance events using data from five public datasets. The main lesson focused on interpretation of...

    Keywords: ecologyundergraduate education

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    2015 Quantitative Biology Education Summit
    Abstract for a meeting, 2015 Quantitative Biology Education Summit.

    Keywords: meetingQUBESRCNquantitative biologyData In Inquiryworkshop

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