You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    2017-D_Goulet-Modeling, Simulating, and Parameter Fitting of Biochemical Kinetic Experiments
    In many chemical and biological applications, systems of differential equations containing unknown parameters are used to explain empirical observations and experimental data. The differential...

    Keywords: optimizationBiochemistrysensitivity analysischromatographymass actioncluster analysisconservation lawsdimerizationestrogen receptor protein

    152

    views

    55

    downloads

    0

    comments

    0

    adaptations

    2017-Bruce_Emerson-Wonderful World of Differential Equations
    This is a terrific set of noted with models and applications woven into the material at every opportunity and data as well. This is introductory differential equations with attention to detail and...

    Keywords: Newton's Second Law of MotionNewton's Law of CoolingreactionsPoiseuille’s Lawstopping distancerate of changeproblemsmodeling opportunities

    114

    views

    71

    downloads

    0

    comments

    0

    adaptations

    2017-Andras_Domokos-Differential Equations - Theory and Applications – Notes
    This is a terrific set of notes with models and applications woven into the material at every opportunity and data as well. This is introductory differential equations with attention to detail and...

    Keywords: Newton's Second Law of MotionNewton's Law of Coolingbiochemical reactionsPoiseuille’s Lawstopping distance

    140

    views

    59

    downloads

    0

    comments

    0

    adaptations

    2016-Starling-EtAl-Local Brewery - A Project for Use in Differential Equations Courses
    We describe a modeling project designed for an ordinary differential equations (ODEs) course using first-order and systems of first-order differential equations to model the fermentation process in...

    Keywords: BEERFermentationbrewery

    137

    views

    51

    downloads

    0

    comments

    0

    adaptations

    2015-Dios-EtAl-How Engineers deal with Mathematics solving Differential Equations
    The students of fourth course, of the bachelor’s degree in Computer Sciences or Industrial Engineering at the University of Salamanca (Spain), they learn mathematics solving real problems with the...

    Keywords: assessmentengineering educationSimulink

    113

    views

    59

    downloads

    0

    comments

    0

    adaptations

    2000-Erdman-Morelock-A Study of Kinetics The Estimation and Simulation of Systems of First-Order Differential Equations
    This paper introduces new and old features of the SAS System for the estimation and simulation of systems of first-order differential equations with emphasis on examples in kinetics.

    Keywords: kineticsSAScompartmentpharmacokinetics

    422

    views

    37

    downloads

    0

    comments

    0

    adaptations

    1996-D_Erdman-MM_Morelock-A Study of Kinetics
    This paper introduces new and old features of the SAS System for the estimation and simulation of systems of first-order differential equations with emphasis on examples in kinetics.

    Keywords: simulationkineticsparameter estimationEnzymesubstratesavingscompartmentstomachbloodginseng

    157

    views

    43

    downloads

    0

    comments

    0

    adaptations

    1975-DH_Griffel-Teaching the formation and solution of differential equations
    This paper raises many interesting questions about teaching the formation (and solution) of differential equations, i.e. modeling with differential equations.

    Keywords: parasitesTopographypopulationepidemictraffic flowsocial interactionsfish weightarms race

    139

    views

    41

    downloads

    0

    comments

    0

    adaptations

    HSI - Student Research Journal - Vol.1 Issue 2 - Fall 2020 v.1.0
    The Headwaters Research Experience students have produced some fascinating research throughout our 10-week program. We encourage all to read their reports in our Vol. 1 - Issue 2 - Fall 2020...

    Keywords: scientific methodscience education

    676

    views

    109

    downloads

    0

    comments

    0

    adaptations

    1-042-KoolAid-ModelingScenario
    Students run experiments involving concentrated solution of drink powder flowing from upper to lower tank, initially filled with plain water. They make qualitative observations about the intensity...

    Keywords: concentrationcompartmenttanksKoolAid

    429

    views

    377

    downloads

    0

    comments

    0

    adaptations

    5-012-LipoproteinModeling-ModelingScenario
    Data from a study on the amounts of low-density-lipoprotein (LDL), form of cholesterol, in blood plasma is presented. Students build, validate, and use a compartment model of the kinetic...

    Keywords: wildlifelow-density-lipoproteintracercompartment modelcholesterolblood plasmabody tissue

    426

    views

    176

    downloads

    0

    comments

    0

    adaptations

    5-030-AirshedSulphur-ModelingScenario
    Temperature inversions and low wind speeds trap air pollutants in a mountain valley for a period of time. Gaseous sulfur compounds are a significant air pollution problem. We offer a model for...

    Keywords: sulphurpollutionairshedhydrogen sulfidesulfur dioxide

    250

    views

    90

    downloads

    0

    comments

    0

    adaptations

    Electron Location, Location, Location: Understanding Biological Interactions
    Introductory Biology courses typically introduce the structure and function of biomolecules such as proteins and nucleic acids. To understand biomolecules fully, students require knowledge of...

    Keywords: hydrogen bondshydrophobicity/hydrophilicitypolar and non-polar covalent bonds

    2640

    views

    650

    downloads

    0

    comments

    0

    adaptations

    Mol* Adaptation: Case of Severe Insulin Resistance
    This is an adaptation using Mol* on the original case written. This case focuses on understanding how a mutation in a cell signalling protein (a kinase) can prevent insulin function and lead to...

    Keywords: molecular visualization and analysisPDBMolecular Case Studyinsulin resistanceMol*MolStar

    884

    views

    155

    downloads

    0

    comments

    0

    adaptations

    Learning about Protein Structure and Function with Molecular CaseNet
    Poster on the case studies available through Molecular CaseNet that focus on protein structure and function. Presented at the 2021 BIOME Institute.

    Keywords: case studiesmolecular biologyProtein Structureprotein function2021 BIOME

    859

    views

    223

    downloads

    0

    comments

    0

    adaptations

    COVID-19: Molecular Basis of Infection
    This case was written in Spring 2020 during the COVID-19 pandemic. It focuses on understanding the structure and interaction of the SARS-Cov-2 viral spike protein that facilitates infection in...

    Keywords: infectionvaccinemolecular visualization and analysisCOVID19PDBSARS-CoVMolecular Case Study

    1963

    views

    649

    downloads

    0

    comments

    2

    adaptations

    A Case of Severe Insulin Resistance
    This case focuses on understanding how a mutation in a cell signalling protein (a kinase) can prevent insulin function and lead to diabetes.

    Keywords: molecular visualization and analysisPDBMolecular Case Studyinsulin resistance

    1412

    views

    560

    downloads

    0

    comments

    1

    adaptations

    Happy Blue Baby
    This case, about a specific mutant of hemoglobin, focuses on visualizing and understanding the molecular basis of why an infant turned blue soon after birth and how the cyanosis resolved on its own...

    Keywords: mutationHemoglobinmolecular visualization and analysisPDBMolecular Case Study

    1459

    views

    536

    downloads

    0

    comments

    3

    adaptations

    National Ecological Observatory Network: A Data Source For Your Classroom
    Poster on NEON resources for use in research and education presented at the 2019 BioQUEST & QUBES Summer Workshop.

    Keywords: faculty mentoring networksNEONNational Ecological Observatory Network

    1147

    views

    395

    downloads

    0

    comments

    0

    adaptations

    Using Data in Limnology
    Poster on the interdisciplinary study of limnology as a "PEAK" integrative learning experience at Concordia Collegepresented at the 2018 QUBES/BioQUEST Summer Workshop

    Keywords: student researchinterdisciplinary educationlimnologyeco-informaticsSummer Workshop 2018

    1210

    views

    270

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search