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    BioGrapher
    BioGrapher is an Excel front-end for the AT&T GraphViz graphical visualization and layout package (http://www.graphviz.org/).

    Keywords: network theorygraph theoryphylogenetic trees

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    An Interactive Protocol for In-Classroom DNA Extraction
    Using commonly available materials, this tool allows students to extract DNA, exploring DNA chemistry and the principles of experimental design and execution. We take a “Choose Your Own...

    Keywords: geneticsDNAbiochemical structure and function

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    1-026-Evaporation-ModelingScenario
    We provide data on evaporation of 91% isopropyl alcohol in six different Petri dishes and one conical funnel and on evaporation of water in one Petri dish. We ask students to develop a...

    Keywords: evaporationconealcoholPetri dish

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    2016-Mehmet_Pakdemirli-Mathematical design of a highway exit curve
    Using fundamental principles of physics and calculus, the differential equation determining the curve function is derived.

    Keywords: kinematicscurve designhighway exittangential acceleration

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    2013-Antonin_Slavik-Mixing Problems with Many Tanks
    Discusses many tank configurations, circular, cascading, in a row, etc. and the attendant matrix representation of the linear mixing model of differential equations.

    Keywords: lineartankmixingcircularcascading

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    2014-Brun-EtAl-An introduction to the mechanics of the lasso
    Here, we study the mechanics of the simplest rope trick, the Flat Loop, in which the rope is driven by the steady circular motion of the roper’s hand in a horizontal plane.

    Keywords: bifurcationmotionlassorod modelrodeo

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    Making “sense” out of surface area to volume relationships
    Using a multimodal approach, the non-linear aspect of the surface area to volume relationship is explored. Students use their their senses of taste and sight to determine how smaller cells and...

    Keywords: active learningintroductory biologycell biologyquantitative skillskinesthetic learningLDC2023

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    Metastatic Mastery: A Case and Game-Based Approach to Learning About Cancer Mechanisms
    Mechanisms that contribute to the development of cancer are numerous and complicated, though most can be traced to a set of mutations in cell cycle regulatory genes that throw the process of cell...

    Keywords: mutationcancertranscriptioncell cycletranslationOncogenesTumor-suppressorp53Transcription factor

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    1-029-ConeToCubeFlow-ModelingScenario
    An inverted right circular cone with a hole at the bottom is suspended above an open-topped cube which also has a hole in the center of the bottom. The cone is filled with water and we model...

    Keywords: waterflowTorricelli's Lawconecube

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    1-014-DrainingContainers
    Given two rectangular circular cylinders of water with the same volume, but different radii, with a small bore hole of same radius on the center of the bottom through which water exits the...

    Keywords: containerstankflowTorricelli's Lawdrainingfixed volume

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    1-055-WaterFallingInCone-ModelingScenario
    We offer an opportunity to model the height of a falling body of water in a right circular cone (funnel) and to estimate an appropriate parameter based on data collected from a video of the...

    Keywords: Torricelli's Lawdischarge coefficientconecontraction coefficient

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    1-120-CircularRollerCoaster-ModelingScenario
    Students study the dynamics of a circular roller coaster and work out the equations of motion in the ideal case as well as considering the interesting complication of including kinetic friction....

    Keywords: population dynamicsenergyFluid Mechanicsmfrictionroller coasterintegration by8 parts

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    1-140-LeakyBucket-ModelingScenario
    We seek to model the height of water in a cylindrical tank (bucket) in which water flows out the bottom of the tank through a small bore hole while we are pouring water into the tank at the top...

    Keywords: flowTorricelli's Lawleaky bucket

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    5-010-DNADegradation-ModelingScenario
    We ask students to use the system of first order linear differential equations given in a source paper and estimates of the data from laboratory procedures from a plot to estimate the parameters...

    Keywords: DNA\kinetisplasmaratpharmacokinetis

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    9-015-UnearthingTruth-ModelingScenario
    This project introduces \textit{electrical resistivity tomography}, a technique of interest for geophysical imaging, used to produce images of underground features or structures by using electrical...

    Keywords: geophysicalImagingStatistical inverse problemtunnelconductionHolocaustVilniusDivergence TheoremfluxLaplace's equationimpedanceelectrical resistivity tomographytomographyresistivity

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    3-080-PendulumModeling-ModelingScenario
    We lead students through building model for several pendulum configurations in motion and ask students to compare results.

    Keywords: pendulumperiodlinearization

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    1-053-SlimeSpread-ModelingScenario
    We offer a video showing real time spread of a cylinder of slime and challenge students to build a mathematical model for this phenomenon.

    Keywords: spreadsheetsslime

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    The Comics Project: Synthesizing and Communicating Science with Comics
    Students, especially non-science majors, often see science as abstracted from their daily lives. Moreover, students often struggle to translate scientific concepts into everyday language in order...

    Keywords: communicating scienceScience & Societycomics

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    Linking Genotype to Phenotype: The Effect of a Mutation in Gibberellic Acid Production on Plant Germination
    Basic concepts in genetics and plant development are often taught in lecture courses without a lab component. This approach provides students with the content knowledge, but fails to make...

    Keywords: geneticsdevelopmentmutationgerminationplantmodel organismGenotype/PhenotypeHormoneSeed

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    A Kinesthetic Modeling Activity to Teach PCR Fundamentals
    Most molecular biology and biological sciences students understand that the polymerase chain reaction (PCR) is used to amplify DNA. However, we have found that some students experience conceptual...

    Keywords: PCR

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