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    Laboratory exercises on microbial growth, horizontal gene transfer, competition and evolution
    Simple laboratory exercises to reinforce student learning when performed in conjunction with NetLogo simulations.

    Keywords: microbiology

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    Seed Dispersal in Tropical Forests
    In this activity, students use data from published studies to understand patterns of seed dispersal and apply these ideas to the design of a conservation area. This was applied through the lens of...
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    Investigating the footprint of climate change on phenology and ecological interactions in north-central North America
    The module was used in lab following lecture material on pairwise interactions in ecology (emphasizing consumption, competition, mutualism), and parallel to community ecology (emphasizing food web...
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    The Flight Physics Concept Inventory: Reliably Evaluating Aerodynamic Lift, Drag and Associated (Naïve) Concepts of Flight in Class and In-Game
    Students often struggle to transfer conceptual understanding from isolated instruction to a coherent mental model. This is especially true for the context of flight physics, fluid dynamics, or the...
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    2015-European_Bioinformatics_Institute-Bio-Models-Database
    Bio Models Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references. All models are...
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    2014-Wang-EtAl-Estimating Mixed-Effects Differential Equation Models
    When multiple replicates of measurements are available for the dynamic process, it is of great interest to estimate mixed-effects in the ODE model for the process. We propose a semiparametric...
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    Integrating the modeling of biogeochemical cycles and energy flow
    This in-class activity challenges students to create and then integrate models of how carbon, nitrogen, water and energy all move within an ecosystem. Using 15 provided standard pools, they work...
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    Using Regression Models to Examine the Effect of Carbon Dioxide on Fluid pH
    In this activity students will use statistics and regression models to explore the effects of carbon dioxide on blood pH by measuring pH changes that occur over time as carbon dioxide reacts with...
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    2015-The European Bioinformatics Institute-BioModels Database
    BioModels Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references.
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    2004-Ledzewicz-Schattler-Application of Control Theory in Modelling Cancer Chemotherapy
    In this paper we discuss how to incorporate more realistic medical aspects of chemotherapy which hitherto have been neglected in the models.
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    2014-Allen-EtAl-Perturbations in Epidemiological Models -When zombies attack we can survive
    In this paper, we investigate the existence of stability-changing bifurcations in epidemiological models used to study the spread of zombiism through a human population.
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    2012-Michael_Kerckhove-From Population Dynamics to Partial Differential Equations
    This article illustrates PDE models for location-dependent carrying capacities, migrations, and the dispersion of a population.
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    2005-JC_Sprott-Dynamical Models of Happiness
    A sequence of models for the time evolution of one’s happiness in response to external events is described.
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    2004-Denny-Yackel-Temperature Models for Ware Hall
    This paper offers some very nice extended models for cooling off a new office area for a mathematics department.
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    2018-Yu-Craciun-Mathematical_Analysis_of_Chemical_Reaction_Systems
    These models of chemical reactions are systems of coupled nonlinear differential equations on the positive orthant.
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    IPMpack: an R package for Integral Projection Models
    IPMpack is an R package (R Development Core Team 2013) that allows users to build and analyse Integral Projection Models.
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    2017-Anders_Kallen-Single species models in continuous time
    Part of a series of Lecture notes this lecture contains rich materials on logistic harvest models, spruce budworms, and chemostat.
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    2005-HP-Hirst-Using the Historical Development of Predator-Prey Models to Teach Mathematical Modeling
    Using the Historical Development of Predator-Prey Models to Teach Mathematical Modeling.
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    Mentoring Undergraduate Research Projects in Mathematical Biology
    Part of the 2015 SMB Minisymposium: Topics in Biomathematics Education
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    2015-Lorelei-Koss-Differential Equations In Art and Film
    This paper investigates how differential equations models have been used to study works in literature, poetry and film.
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