You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Aging and Circular RNAs
    A science FIT seminar presented to incoming freshmen at UNR

    Keywords: videosbioinformaticsRNAaginggenomicsyoutubecircular rna

    1138

    views

    254

    downloads

    0

    comments

    0

    adaptations

    Using Jetstream for Bioinformatics
    A pre-class screencast for UCSD’s Foundations of Bioinformatics course (BGGN-213).

    Keywords: videosbioinformaticsgenomicsyoutubescreen castjetstream

    1012

    views

    219

    downloads

    0

    comments

    0

    adaptations

    NCBI Overview
    An overview of some of the databases within NCBI and how to get FASTA sequences.

    Keywords: videosbioinformaticsFASTAgenomicsNCBIyoutube

    1034

    views

    194

    downloads

    0

    comments

    0

    adaptations

    UniProt
    Brief description of UniProt and its databases and features

    Keywords: videosbioinformaticsgenomicsyoutubeuniprot

    1205

    views

    211

    downloads

    0

    comments

    0

    adaptations

    GSEAtheory
    Brief introduction to how gene set enrichment analysis works.

    Keywords: videosbioinformaticsgenomicsyoutubegsea

    1302

    views

    244

    downloads

    0

    comments

    0

    adaptations

    What is bioinformatics?
    Short description of what bioinformatics is, it's potential applications, and what it is not.

    Keywords: videosbioinformaticsgenomicsintroductionyoutube

    1058

    views

    224

    downloads

    0

    comments

    0

    adaptations

    1999-Peter_Deuflhard-Differential Equations in Technology and Medicine
    It deals with a variety of challenging real life problems selected from clinical cancer therapy, communication technology, polymer production, and pharmaceutical drug design.

    Keywords: cancerdesigntumordrugpolymertherapy

    118

    views

    38

    downloads

    0

    comments

    0

    adaptations

    Making toast: Using analogies to explore concepts in bioinformatics
    Module using analogies to introduce students to genomics

    Keywords: bioinformaticsgenomicsworkflowNIBLSECourseSourceanalogiesbioinformatics workflows

    1174

    views

    266

    downloads

    0

    comments

    0

    adaptations

    Implementing an online module about plant functional traits in the context of restoration ecology for an undergraduate class in Brazil.
    This resource describes my experience in implementing this OCELOTS module in a Functional Trait-based Restoration class for undergraduate majors in the Forest Sciences Department / Escola Superior...

    Keywords: tropical forestsbiodiversity structureAtlantic forestfunctional traitshybrid ecosystems

    669

    views

    40

    downloads

    0

    comments

    0

    adaptations

    Snapshot Serengeti Online Lab
    Snapshot Serengeti is a fully online inquiry-based lab that uses real camera-trap data from Serengeti National Park in Tanzania to explore themes of tropical ecology and animal behavior.

    Keywords: ecologyspecies interactionscitizen scienceCommunity Ecologyanimal behaviormigration ecologyScience Communicationspecies distributionspredator-prey interactionsTropical ecologycamera trapsSerengetisavannah biome

    357

    views

    57

    downloads

    0

    comments

    0

    adaptations

    2020-Stepien_Kostelich_Kuang-Mathematics Cancer An Undergraduate Bridge Course in Applied Mathematics
    Most undergraduates have limited experience with mathematical modeling. This paper describes a course on the mathematical models of cancer growth and treatment.

    Keywords: differential equationsmodelingundergraduate educationcancertumor

    220

    views

    51

    downloads

    0

    comments

    0

    adaptations

    A Fun Introductory Command Line Lesson: Next Generation Sequencing Quality Analysis with Emoji!
    Radical innovations in DNA sequencing technology over the past decade have created an increased need for computational bioinformatics analyses in the 21st century STEM workforce. Recent...

    Keywords: bioinformaticsgenomicscodingJupyter notebookcommand lineCyVersescriptingnext generation sequencing analysis

    2674

    views

    500

    downloads

    2

    comments

    0

    adaptations

    2010-Shianga-EtAl-Computational model of the human glucose-insulin regulatory system
    A computational model of insulin secretion and glucose metabolism for assisting the diagnosis of diabetes mellitus in clinical research is introduced. The

    Keywords: glucose tolerance testsum of squared residualsmultiple shooting methodcost function

    92

    views

    37

    downloads

    0

    comments

    0

    adaptations

    A Hands-on Introduction to Hidden Markov Models
    In this Lesson, we describe a classroom activity that demonstrates how a Hidden Markov Model (HMM) is applied to predict a eukaryotic gene, focusing on predicting one exon-intron boundary. This HMM...

    Keywords: transcriptionexonintronsplicing

    3024

    views

    647

    downloads

    0

    comments

    0

    adaptations

    Investigating Cell Signaling with Gene Expression Datasets
    Modern molecular biology is a data- and computationally-intensive field with few instructional resources for introducing undergraduate students to the requisite skills and techniques for analyzing...

    Keywords: genomicstranscriptionsignaling

    7582

    views

    360

    downloads

    0

    comments

    0

    adaptations

    AI Tools in Pedagogy
    Overview of ideas to discuss when it comes to usage of artificial intelligence in pedagogy

    Keywords: Artificial Intelligence

    225

    views

    95

    downloads

    0

    comments

    0

    adaptations

    Single Cell Insights Into Cancer Transcriptomes: A Five-Part Single-Cell RNAseq Case Study Lesson
    There is a growing need for integration of “Big Data” into undergraduate biology curricula. Transcriptomics is one venue to examine biology from an informatics perspective. RNA sequencing has...

    Keywords: bioinformaticscancertranscriptomicshigh-throughputData wranglingSingle cell RNA sequencingq

    6292

    views

    1578

    downloads

    0

    comments

    0

    adaptations

    SNAPSHOT SERENGETI: Analyzing Wildlife Ecological Relationships in an upper-level Ecology course
    Two assignments were created to develop skills in ecological hypothesis testing, data analysis and interpretation using the Snapshot Serengeti and Gorongosa camera trap data and graphical...

    Keywords: hypothesis testinggraphical analysis and interpretationsavannah biomeecological relationshipscompare and contrast to primary literature

    236

    views

    122

    downloads

    0

    comments

    0

    adaptations

    Understanding Gene Prediction Programs
    Introduces students to the key biological concepts underlying computational gene prediction. Outcomes include ability to analyze and evaluate output of gene prediction programs, and reflect on...

    Keywords: Genome annotationSEA-PHAGESgene predictiongenemarkcoding potentialcodon biassix frame translation

    1132

    views

    1153

    downloads

    2

    comments

    0

    adaptations

    Hawk vs. Dove Game
    Hawk vs. Dove Game is a model of conflict for two players in game theory.

    Keywords: mathematical modelcomputational modelagent-based model

    949

    views

    243

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search