You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Does Organelle Shape Matter?: Exploring Patterns in Cell Shape and Structure with High-Throughput (HT) Imaging
    Organelle structure has been studied and visualized for decades; however, publicly available databases that use improved high-throughput microscopy of gene-edited cell lines have recently...

    Keywords: modelingcase studymicroscopystructureOrganellesHigh-throughput (HT)Endoplasmic Reticulum (ER)Fluorescent microscopyHuman Cell Biology

    4626

    views

    458

    downloads

    0

    comments

    0

    adaptations

    Teaching the Central Dogma Using a Case Study of Genetic Variation in Cystic Fibrosis
    The central dogma of biology is a foundational concept that is traditionally included in genetics curricula at all academic levels. Despite its ubiquitous presence throughout genetics education,...

    Keywords: transcriptioncentral dogmatranslationsequence analysisDNA replicationgenetic variants

    4578

    views

    1117

    downloads

    1

    comments

    0

    adaptations

    Using Synthetic Biology and pClone Red for Authentic Research on Promoter Function: Introductory Biology (identifying new promoters)
    Students often memorize the definition of a transcriptional promoter but fail to fully understand the critical role promoters play in gene expression. This laboratory lesson allows students to...

    Keywords: bacteriasynthetic biologygene regulationtranscriptionstudent researchcentral dogmacloningpromoterreporter gene/protein

    2753

    views

    574

    downloads

    0

    comments

    0

    adaptations

    2007-Zenker-Rubin-Clermont-From inverse problems in mathematical physiology to quantitative differential diagnoses
    The improved capacity to acquire quantitative data in a clinical setting has generally failed to improve outcomes in acutely ill patients, suggesting a need for advances in computer-supported data...

    Keywords: physiologyinverse problem

    112

    views

    28

    downloads

    0

    comments

    0

    adaptations

    CRISPR/Cas9 in yeast: a multi-week laboratory exercise for undergraduate students
    Providing undergraduate life-science students with a course-based research experience that utilizes cutting-edge technology, is tractable for students, and is manageable as an instructor is a...

    Keywords: bioinformaticsPCRphenotypingCRISPR/Cas9gene editingcloningGenotypingRestriction enzyme

    3112

    views

    1107

    downloads

    0

    comments

    0

    adaptations

    "Boost your evolution IQ": An evolution misconceptions game
    Students often enter introductory biology courses with misconceptions about evolution. For example, many students believe that traits arise when a species needs them or that evolutionary processes...

    Keywords: Evolutionactive learningNatural Selectiongroup workmisconceptions

    1656

    views

    643

    downloads

    0

    comments

    0

    adaptations

    1-155-CruiseControl-ModelingScenario
    In this project we illustrate the design of a proportional-integral-derivative (PID) cruise control algorithm for an automobile. PID control is one of the most common techniques in control...

    Keywords: PID controllerfeedback controlControl theorycruise controlautomobileclosed-loop controlinput-ouputblock diagram

    312

    views

    537

    downloads

    0

    comments

    0

    adaptations

    2017-Alex_Honchar-Neural Networks For Solving Differential Equations
    In this post I want to show how I applied simple feed-forward NNs to different differential equations with increasing complexity: ODEs, second order ODEs, and, finally, PDEs.

    Keywords: neural networksCybenko theoremdiffusion equationfluid dynamics

    115

    views

    60

    downloads

    0

    comments

    0

    adaptations

    2015-Liang-EtAl-Advanced ordinary differential equation based head modelling for Chinese marionette art preservation
    This paper addresses the heritage preservation of the marionette head carving by digitalizing the head models with a novel modelling technique using ordinary differential equations (ODEs).

    Keywords: digitizationcontrolmarionetteChinese marionettehead carving

    108

    views

    69

    downloads

    0

    comments

    0

    adaptations

    2003-Fay-Graham-Coupled spring equations
    Coupled spring equations for modelling the motion of two springs with weights attached, hung in series from the ceiling are described.

    Keywords: spring massoscillationHooke's Lawcoupled springsperiodicforcing functionphase portrait

    96

    views

    58

    downloads

    0

    comments

    0

    adaptations

    2004-Jones-Song-Thomas-Controlling wound healing through debridement
    In this article, a system of differential equations that models slough/wound interaction is developed.

    Keywords: bacteriawound healinghealingderidingisocline

    118

    views

    46

    downloads

    0

    comments

    0

    adaptations

    2003-Fay-Graham-Coupled spring equations
    Coupled spring equations for modelling the motion of two springs with weights attached, hung in series from the ceiling are described.

    Keywords: massoscillationspring\coupled springsperiodicfporcing

    119

    views

    39

    downloads

    0

    comments

    0

    adaptations

    9-001-SkinBurnModelNumericalMethods-TechniqueNarrative
    The heat equation is an important partial differential equation (PDE) which describes the distribution of heat in a given region over time. Numerical methods play an important role in solving these.

    Keywords: Maternal-Fetal interfaceheat equationConservation of Energytheat fluxEuler's forward methodcentral differenceskin burnhyperthermiathermal conductivitylayers

    326

    views

    185

    downloads

    0

    comments

    0

    adaptations

    1-030-RandomPerturbation-TechniqueNarrative
    After a brief historical view of this problem, we will demonstrate the derivation of first order linear differential equations with random perturbations.

    Keywords: random perturbationBrownian motionLangevin equationRiemann-Steiltjes integralWiener processIto's calculus

    302

    views

    155

    downloads

    0

    comments

    0

    adaptations

    3-150-ItsABlastFurnace-ModelingScenario
    This project uses the steady-state heat equation to model the temperature distribution in an industrial furnace used for metal production, for example, a blast furnace.

    Keywords: steady stateheat equationinverse problemfurnace

    156

    views

    135

    downloads

    0

    comments

    0

    adaptations

    3-095-ShotInWater-ModelingScenario
    This project uses Newton's Second Law of Motion in conjunction with a quadratic model for the resistance experienced by a bullet moving through water to analyze a classic action movie scene.

    Keywords: projectile motionterminal velocityprojectilewater resistancereduction of orderfrictionair resistance

    172

    views

    124

    downloads

    0

    comments

    0

    adaptations

    3-044-DeepWell-ModelingScenario
    We drop a pebble in a deep well. Given the time elapsed from release of the pebble until we hear the splash determine the depth of the well.

    Keywords: gravityprojectile motionfalling bodyspeed of sound

    256

    views

    161

    downloads

    0

    comments

    0

    adaptations

    3-099-PullBack-ModelingScenario
    We guide students through the development of an empirical model for the velocity and distance traveled of a simple pull-back toy. Students can record videos and extract data using their own...

    Keywords: dynamicspull-back toy

    268

    views

    221

    downloads

    0

    comments

    0

    adaptations

    3-020-ChordPathTime-ModelingScenario
    Using Newton's Second Law of motion we can determine the time it takes for a mass to slide along a chord of a vertical circle from high point to any point along the circle. Initially, the result is...

    Keywords: Unit CirclepathfallinggravitychordNetwon's Second Law of Motion

    186

    views

    105

    downloads

    0

    comments

    0

    adaptations

    1-107-ClothDry-ModelingScenario
    We build a mathematical model for the rate of drying in a wet cloth while hanging in air. A model can be based on underlying physical principles (analytic) or based on observations and reasoned...

    Keywords: dryingclothevaporation

    171

    views

    161

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search