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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    2020-Cline-EtAl-A Vision for Projects Across the Mathematics Curriculum
    We describe a model that incorporates projects at all stages across the undergraduate mathematics curriculum. Finally, we provide samples of projects that we have used in selected courses.

    Keywords: projectstechnical writinginterdisciplinary skills

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    Using Undergraduate Molecular Biology Labs to Discover Targets of miRNAs in Humans
    Incorporating authentic research experiences into undergraduate labs, while shown to be particularly effective at engaging and retaining students in STEM majors, can be difficult to accomplish...

    Keywords: gene regulationmicroRNAsgene expression

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    REMNet: Introduction To Instructors 5.3.19
    Video on incorporating microbiome sequencing into biology education from the Research Experiences in Microbiomes Network

    Keywords: VideomicrobiomesREMNetmicrobiome sequencing

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    Faculty Mentoring Networks: A model for professional development in undergraduate quantitative biology education
    Presentation given at ESA 2016 on Faculty Mentoring Networks.

    Keywords: faculty mentoring networksEcological Society of Americaquantitative biology education

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    BIOME 2024 Workshop: “But we don’t teach ecology!”
    OCELOTS modules are open-access case studies in tropical ecology that promote active learning, quantitative skills, and systems thinking. This workshop is the prelude to a Fall FMN for adapting...

    Keywords: International researchtropical biologyBIOME 2024

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    Gender and Classroom Participation: A Case for Quantitative Analysis
    Teaching statistics to students using authentic research is one way to highlight the transferability and value of the material taught in the class. Below we describe an activity in Statistics for...

    Keywords: statisticsgenderpopulationProportionSampleEquality

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    Pick Your Poison: A Semester-Long Case Study for Undergraduate Toxicology
    The ability to collate information from diverse scientific resources and effectively employ scientific writing is an essential skill for scientists. This lesson describes a semester-long project...

    Keywords: risk assessmenttoxicologyPharmacologyregulationsdose responseADME

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    SOAR - San Francisco Bay Research Coordination Network for Student Opportunities in Avian Research to enhance STEM education and assess human impacts on avian biodiversity (RCN-UBE Introduction)
    The San Francisco Bay Research Coordination Network for Student Opportunities in Avian Research (SOAR) brings together faculty, students, and volunteers to implement an experiential learning and...

    Keywords: RCN-UBE Introduction

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    Transforming your CUREs with SENCER
    Presentation on Science Education for New Civic Engagements and Responsibilities given as part of the 2020 BioQUEST & QUBES BIOME Institute: Cultivating Scientific Curiosity.

    Keywords: course based undergraduate research experiencesCURESENCERcivic engagement

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    Passion-Driven Statistics
    E-book in .pdf format and customizable .iba format

    Keywords: statisticstextbook

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    Understanding Protein Domains: A Modular Approach
    An understanding of protein structure, function, and interaction is central to biochemistry. One angle into this topic is to engage students in considering protein domains as modules that develop...

    Keywords: Protein Structure

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    A Fun Introductory Command Line Lesson: Next Generation Sequencing Quality Analysis with Emoji!
    Radical innovations in DNA sequencing technology over the past decade have created an increased need for computational bioinformatics analyses in the 21st century STEM workforce. Recent...

    Keywords: bioinformaticsgenomicscodingJupyter notebookcommand lineCyVersescriptingnext generation sequencing analysis

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    Using QIIME to Interpret Environmental Microbial Communities in an Upper Level Metagenomics Course
    Metagenomics is rapidly evolving due to advances in sequencing technologies and bioinformatics, but without proper training to interpret these datasets, student understanding remains limited. Aimed...

    Keywords: microbiome

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    HSI - Student Research Journal - Vol.2 Issue 1 - Spring 2021
    The Headwaters Research Experience students have produced some fascinating research throughout our 10-week program. We encourage all to read their reports in our Vol. 2 - Issue 1 - Spring 2021...

    Keywords: scientific methodscience education

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    HSI - Student Research Journal - Vol.1 Issue 4 - Fall 2020
    The Headwaters Research Experience students have produced some fascinating research throughout our 10-week program. We encourage all to read their reports in our Vol. 1 - Issue 4 - Fall 2020...

    Keywords: scientific methodscience education

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    HSI - Student Research Journal - Vol.1 Issue 2 - Fall 2020 v.1.0
    The Headwaters Research Experience students have produced some fascinating research throughout our 10-week program. We encourage all to read their reports in our Vol. 1 - Issue 2 - Fall 2020...

    Keywords: scientific methodscience education

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    Learning Frameworks Aid Goal-oriented Course Design
    As a new instructor it can be hard to know where to begin. Thankfully, CourseSource's learning frameworks (https://www.coursesource.org/courses) shaped my approach to teaching as a first year...

    Keywords: backward designlearning goalscourse design

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    Sequence Similarity: An inquiry based and "under the hood" approach for incorporating molecular sequence alignment in introductory undergraduate biology courses
    Introductory bioinformatics exercises often walk students through the use of computational tools, but often provide little understanding of what a computational tool does "under the...

    Keywords: BLASTmultiple sequence alignmentsequence similarityphylogramZika virusAlgorithmScoring Matrix

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    Promoting Climate Change Literacy for Non-majors: Implementation of an atmospheric carbon dioxide modeling activity as an inquiry-based classroom activity
    Students who are directly involved in scientific activities develop a deeper understanding and appreciation of both scientific knowledge and the scientific process. This understanding is critically...

    Keywords: modelingExcelquantitativeclimate changeEnvironmental Biologyatmospheric carbon dioxide

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    Learning Journal Assignment on Biofilms
    This is a learning journal assignment with constructive response questions on Biofilms which undergraduate students can complete with aid of reading a research article and listening to a podcast.

    Keywords: educationPodcastmicrobiologygenomicsUndergraduateAnalysisBioflimsLearning Journal Assignmet

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