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    Introduction to Genome Browser: What is a Gene?
    In this module, we will use a web-based visualization tool called a Genome Browser to explore the structure of a eukaryotic gene, and obtain a basic understanding of how this information is...
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    CRISPR/Cas9 in yeast: a multi-week laboratory exercise for undergraduate students
    Providing undergraduate life-science students with a course-based research experience that utilizes cutting-edge technology, is tractable for students, and is manageable as an instructor is a...

    Keywords: bioinformaticsPCRphenotypingCRISPR/Cas9gene editingcloningGenotypingRestriction enzyme

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    Using Synthetic Biology and pClone Red for Authentic Research on Promoter Function: Introductory Biology (identifying new promoters)
    Students often memorize the definition of a transcriptional promoter but fail to fully understand the critical role promoters play in gene expression. This laboratory lesson allows students to...

    Keywords: bacteriasynthetic biologygene regulationtranscriptionstudent researchcentral dogmacloningpromoterreporter gene/protein

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    Using genomic data and machine learning to predict antibiotic resistance: a tutorial paper
    Antibiotic resistance is a global public health concern. Bacteria have evolved resistance to most antibiotics, which means that for any given bacterial infection, the bacteria may be resistant to...

    Keywords: Tutorialmachine learningantibiotic-resistanceArtificial Intelligence

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    Invasion, Restoration, and Response: Assessing changes in arthropod community assemblage using both parametric and non-parametric approaches
    This lesson, which is based around a recently published paper in the Journal of Ecological Applications, introduces students to both parametric and non-parametric approaches to statistical analysis...

    Keywords: ecologyANOVAInvasive Speciesspecies diversityquantitative analysisupper level wetland ecologysalt marshesarthropodsShannon diversity indexleast significant differences

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    Environmental Pollution & Public Health (Project EDDIE) used in an introductory Environmental Challenges course
    Environmental health is a field of study within public health that is concerned with human-environment interactions, and specifically, how the environment influences public well-being. In this...

    Keywords: public healthProject EDDIEpollution

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    1-165-FlushToilet-ModelingScenario
    This activity analyzes the spread of a technological innovation using the Bass Model from Economics. The equation is a first-order, two-parameter separable equation and the solution has a...

    Keywords: juliaDiffusioninnovationrate of innovationBass modelSolver

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    5-040-TunedMassDamper-Part-I-Modeling Scenario
    We offer an opportunity to build mathematical models to mitigate dangerous displacements in structures using structural improvements called Tuned Mass Dampers. We model the motion of the original...

    Keywords: structurespring-mass-dashpotspring massearthquakevibrationtuned mass tunerrestoring forcecontroldampe

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    Exploring Health Inequities and Redlining
    For this assignment, students will investigate relationships between historic redlining data and modern statistics of human health.

    Keywords: diseasehealthsocial justicepublic healthData science for Biologistredliningchronic diseasesocial vulnerability

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    Assessing Socioeconomic Trends in Tree Cover and Human Health in Urban Environments
    In this exercise, students use a combination of publicly available data and tree cover data that they generate using iTree Canopy to test whether tree cover is equitably distributed within the city...

    Keywords: social justiceSimple Linear Regressionenvironmental justiceGeographic Information System (GIS)Using ExcelConnection to PlaceredliningEcosystem Servicesurban tree coverurban environments

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    STEM Inclusive Teaching Practices Webinar Series: The Biocultural Labels Initiative
    The Biocultural (BC) Labels initiative is focused on accurate provenance, transparency and integrity in research engagements with Indigenous communities. ...

    Keywords: dataEquitynatural history museumsAttributionBiocultural LabelsTraditional Knowledge LabelsIndigenous data sovereigntyIndigenous rights

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    Materials for Teaching the SIR Epidemic Model
    This web page contains materials created by faculty of the University of Nebraska-Lincoln Department of Mathematics to teach basic fundamentals of mathematical epidemiology.
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    Bioimage Informatics Activity
    Students use basic bioimage informatics techniques to acquire quantitative data from images of cultured cells and test a hypothesis about the effect of a genetic mutation on cellular phenotypes

    Keywords: geneticsResources @ HHMI - BioInteractivegenomicscancergenetic basis of diseasebiology of cells

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    Analyzing interesting images motivates mathematics and statistics learning
    Presentation by Jeremy Wojdak made as part of the "Bringing Research Data to the Ecology Classroom: Opportunities, Barriers, and Next Steps” Session at the Ecological Society of America annual...

    Keywords: Ecological Society of America

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    Gratitude Interventions in a Biology Course to Foster Student Persistence and Success
    College students are experiencing a mental health crisis, which has been further exacerbated by the COVID-19 pandemic. This is problematic because stress and anxiety impede learning. One way to...

    Keywords: mental healthgratitudepositive psychologydegree commitment

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    Using Synthetic Biology and pClone Red for Authentic Research on Promoter Function: Genetics (analyzing mutant promoters)
    Students often memorize the definition of a transcriptional promoter but fail to fully understand the critical role promoters play in gene expression.  This laboratory lesson allows students...

    Keywords: bacteriasynthetic biologygene regulationtranscriptionstudent researchcentral dogmacloningpromoterreporter gene/protein

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    A Laboratory Module That Explores RNA Interference and Codon Optimization Through Fluorescence Microscopy Using Caenorhabditis elegans
    Scientific research experiences are beneficial to students allowing them to gain laboratory and problem-solving skills, as well as foundational research skills in a team-based setting. We designed...

    Keywords: microscopyC. elegansquantitative analysisinquiry-based learninggene expressionRNA interferenceCodon UsageLaboratory Module

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    The Case of the Missing Strawberries: RFLP analysis
    While solving the fictional mystery of the missing strawberries, students are engaged in a guided-inquiry lesson featuring small-group and class discussions, hands-on activities, and laboratory...

    Keywords: process of scienceDNAforensicsgel electrophoresisMolecular genotypingRestriction endonucleaseRestriction enzymeRestriction fragment length polymorphismRFLP

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    Tackling "Big Data" with Biology Undergrads: A Simple RNA-seq Data Analysis Tutorial Using Galaxy
    Analyzing high-throughput DNA sequence data is a fundamental skill in modern biology. However, real and perceived barriers such as massive file sizes, substantial computational requirements, and...

    Keywords: bioinformaticsDNA sequenceRNAseqgene expression

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    Resources for Assessing Educational Interventions in Biology at the Collegiate Level
    Most scientific research is judged based on the quality of controlled experiments and carefully analyzed results. In addition, proper levels of regulation in terms of biosafety and animal usage are...

    Keywords: researchassessmentpedagogylearning gainsIRBregulatory compliance

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