You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    2017-D_Goulet-Modeling, Simulating, and Parameter Fitting of Biochemical Kinetic Experiments
    In many chemical and biological applications, systems of differential equations containing unknown parameters are used to explain empirical observations and experimental data. The differential...

    Keywords: optimizationBiochemistrysensitivity analysischromatographymass actioncluster analysisconservation lawsdimerizationestrogen receptor protein

    113

    views

    35

    downloads

    0

    comments

    0

    adaptations

    A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!
    This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.

    Keywords: data sciencebioinformaticsnext generation sequencingquality controlFASTQgenomicsprogrammingNIBLSElinuxmicrobiomeIllumina sequencingcommand lineFASTQEFASTPNGS analysisterminalMacemojiPhred scoreTrimmingshort read

    2454

    views

    2256

    downloads

    1

    comments

    0

    adaptations

    3-043-BallisticModeling-SpongeDart-ModelingScenario
    The goal of this project is for students to develop, analyze, and compare three different models for the flight of a sponge dart moving under the influences of gravity and air resistance.

    Keywords: projectile motionair resistanceballisticsdimensional analysisNewtonian mechanicssponge dartNerf gunNerf dartBuckingham's Theorem

    507

    views

    519

    downloads

    0

    comments

    0

    adaptations

    Designing undergraduate biology curricula to teach skills and knowledge for data-intensive environmental research
    Poster presented at Ecological Society of America Annual Conference 2017.

    Keywords: data literacy

    853

    views

    171

    downloads

    0

    comments

    0

    adaptations

    UW Data Science for Social Good program
    The UW Data Science for Social Good (DSSG) program partners eScience Data Scientists and Student Fellows from across the country with Project Leads from academia, government, and the private sector...
    1351

    views

    360

    downloads

    0

    comments

    0

    adaptations

    Module M.4 Simple linear regression analysis
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

    540

    views

    330

    downloads

    0

    comments

    0

    adaptations

    Exercise on "Globally endangered sea turtles of the Palmyra Atoll National Wildlife Refuge: A Focus on Scientific Analysis"
    This data-driven endangered sea turtle exercise adapted from http://qubeshub.org was developed for undergraduate students in an online non-majors biology course as a final small group project.

    Keywords: Resource Type

    1042

    views

    895

    downloads

    0

    comments

    0

    adaptations

    Examining human impacts on tusk evolution in elephants using authentic research data
    In this activity students explore and analyze real, authentic research data paired with HHMI’s “Selection for Tuskless Elephants” video in a hands-on investigation of human impacts on elephant...
    2328

    views

    4893

    downloads

    0

    comments

    1

    adaptations

    1-017-DiseaseSpread-ModelingScenario
    Using a grid and m&m candies, we simulate the spread of disease. Students conduct the simulation and collect data to estimate parameters (in several ways) in a differential equation model for the...
    231

    views

    242

    downloads

    0

    comments

    0

    adaptations

    1-001B-DeathImmigrationMystery-ModelingScenario
    We describe a classroom activity in which students use M\&M candies to simulate death and immigration. Each student conducts an experiment with an immigration rate unique to that student - of that...

    Keywords: m&mMystery Novelsimmigrationexperimentdeath

    200

    views

    244

    downloads

    0

    comments

    0

    adaptations

    1-054-GrowthInFarmland-ModelingScenario
    An enriching project developing a model from data with missing temporal information is described. Students fit functions to the data that leads to the creation of a differential equations model,...

    Keywords: fittingfarmfarmland

    162

    views

    172

    downloads

    0

    comments

    0

    adaptations

    RNA-seq Analysis
    In this computer lab module, students learn how to process an RNA-seq data set to identify differentially expressed genes (DEGs). The samples for this data set were collected from yeast cells...

    Keywords: LabRNAsequencingUndergraduateNIBLSEincubatorsRNAseqInstructional SettingAudience LevelActivity LengthMore than 1 hourC4. Bioinformatics toolsC5. Data retrievalReviewed at NIBLSEdifferentially expressed genes

    1510

    views

    273

    downloads

    0

    comments

    0

    adaptations

    NEON data in undergraduate ecology courses: Data skills and learning opportunities
    Presentation made by Wendy Gram et al. as part of the "Bringing Research Data to the Ecology Classroom: Opportunities, Barriers, and Next Steps” Session at the Ecological Society of America...

    Keywords: Ecological Society of AmericaNEONNational Ecological Observatory Network

    1023

    views

    160

    downloads

    0

    comments

    0

    adaptations

    6-001-Epidemic-ModelingScenario
    This paper presents real-world data, a problem statement, and discussion of a common approach to modeling that data, including student responses. In particular, we provide time-series data on the...

    Keywords: datadifference equationsparameter estimationcontinuousepidemicdiscreteboarding school

    498

    views

    446

    downloads

    0

    comments

    0

    adaptations

    9-020-HeatDiffusion-ModelingScenario
    This project guides students through experimental, analytical, and numerical techniques for understanding the heat (diffusion) equation with nonhomogeneous boundary conditions. In particular,...

    Keywords: laboratoryDiffusionheat

    166

    views

    245

    downloads

    0

    comments

    0

    adaptations

    Winter is Coming! Data Nuggets Module - Adapted for Preservice Elementary Teachers
    Adaptation of Data Nuggets Module Winter is Coming! for an Elementary Education Science Methods Course

    Keywords: teacher educationscience teacher preparationData Nuggetmiddle grades (4-9)

    1841

    views

    978

    downloads

    0

    comments

    0

    adaptations

    9-002-GroundWaterFlow-ModelingScenario
    The goals of this project are to compare a conceptual one-dimensional groundwater flow model to observations made in a laboratory setting, and to discuss the differences.

    Keywords: sgroundwater flowDarcy's Lawheat equationaquiferhydraulic headFourier's Lawsand tank

    287

    views

    525

    downloads

    0

    comments

    0

    adaptations

    1-028-SouthernSweetIcedTea-ModelingScenario
    We offer raw data collected from a webcam and a thermometer for evaluating the strength of steeping tea. We ask students to build a mathematical model using the data to predict how long the tea...

    Keywords: dataNewton's Law of Coolingteasweet tea

    271

    views

    227

    downloads

    0

    comments

    0

    adaptations

    1-073-WaterExitBottle-ModelingScenario
    We offer an experiment in which data is collected to ascertain a parameter in the differential equation formulation of Torricelli's Law for water flow out of a cylindrical container.

    Keywords: datawaterflowTorricelli's Lawbottle

    186

    views

    99

    downloads

    0

    comments

    0

    adaptations

    3-103-PullBackCars-ModelingScenario
    This activity offers analysis of a toy pull-back car: solution of a differential equation from model; data collection and parameter estimation; and adapting the model to predict maximum speed and...

    Keywords: modelingdynamicshands-ontoypull-back carpullback

    202

    views

    212

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search