You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    2017-D_Goulet-Modeling, Simulating, and Parameter Fitting of Biochemical Kinetic Experiments
    In many chemical and biological applications, systems of differential equations containing unknown parameters are used to explain empirical observations and experimental data. The differential...

    Keywords: optimizationBiochemistrysensitivity analysischromatographymass actioncluster analysisconservation lawsdimerizationestrogen receptor protein

    141

    views

    52

    downloads

    0

    comments

    0

    adaptations

    A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!
    This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.

    Keywords: data sciencebioinformaticsnext generation sequencingquality controlFASTQgenomicsprogrammingNIBLSElinuxmicrobiomeIllumina sequencingcommand lineFASTQEFASTPNGS analysisterminalMacemojiPhred scoreTrimmingshort read

    2578

    views

    2293

    downloads

    1

    comments

    0

    adaptations

    3-043-BallisticModeling-SpongeDart-ModelingScenario
    The goal of this project is for students to develop, analyze, and compare three different models for the flight of a sponge dart moving under the influences of gravity and air resistance.

    Keywords: projectile motionair resistanceballisticsdimensional analysisNewtonian mechanicssponge dartNerf gunNerf dartBuckingham's Theorem

    529

    views

    563

    downloads

    0

    comments

    0

    adaptations

    Designing undergraduate biology curricula to teach skills and knowledge for data-intensive environmental research
    Poster presented at Ecological Society of America Annual Conference 2017.

    Keywords: data literacy

    943

    views

    180

    downloads

    0

    comments

    0

    adaptations

    UW Data Science for Social Good program
    The UW Data Science for Social Good (DSSG) program partners eScience Data Scientists and Student Fellows from across the country with Project Leads from academia, government, and the private sector...
    1433

    views

    376

    downloads

    0

    comments

    0

    adaptations

    Module M.4 Simple linear regression analysis
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

    618

    views

    352

    downloads

    0

    comments

    0

    adaptations

    Exercise on "Globally endangered sea turtles of the Palmyra Atoll National Wildlife Refuge: A Focus on Scientific Analysis"
    This data-driven endangered sea turtle exercise adapted from http://qubeshub.org was developed for undergraduate students in an online non-majors biology course as a final small group project.

    Keywords: Resource Type

    1091

    views

    927

    downloads

    0

    comments

    0

    adaptations

    Examining human impacts on tusk evolution in elephants using authentic research data
    In this activity students explore and analyze real, authentic research data paired with HHMI’s “Selection for Tuskless Elephants” video in a hands-on investigation of human impacts on elephant...
    2439

    views

    5015

    downloads

    0

    comments

    1

    adaptations

    1-017-DiseaseSpread-ModelingScenario
    Using a grid and m&m candies, we simulate the spread of disease. Students conduct the simulation and collect data to estimate parameters (in several ways) in a differential equation model for the...
    256

    views

    292

    downloads

    0

    comments

    0

    adaptations

    1-001B-DeathImmigrationMystery-ModelingScenario
    We describe a classroom activity in which students use M\&M candies to simulate death and immigration. Each student conducts an experiment with an immigration rate unique to that student - of that...

    Keywords: m&mMystery Novelsimmigrationexperimentdeath

    246

    views

    278

    downloads

    0

    comments

    0

    adaptations

    1-054-GrowthInFarmland-ModelingScenario
    An enriching project developing a model from data with missing temporal information is described. Students fit functions to the data that leads to the creation of a differential equations model,...

    Keywords: fittingfarmfarmland

    204

    views

    186

    downloads

    0

    comments

    0

    adaptations

    RNA-seq Analysis
    In this computer lab module, students learn how to process an RNA-seq data set to identify differentially expressed genes (DEGs). The samples for this data set were collected from yeast cells...

    Keywords: LabRNAsequencingUndergraduateNIBLSEincubatorsRNAseqInstructional SettingAudience LevelActivity LengthMore than 1 hourC4. Bioinformatics toolsC5. Data retrievalReviewed at NIBLSEdifferentially expressed genes

    1593

    views

    288

    downloads

    0

    comments

    0

    adaptations

    NEON data in undergraduate ecology courses: Data skills and learning opportunities
    Presentation made by Wendy Gram et al. as part of the "Bringing Research Data to the Ecology Classroom: Opportunities, Barriers, and Next Steps” Session at the Ecological Society of America...

    Keywords: Ecological Society of AmericaNEONNational Ecological Observatory Network

    1090

    views

    168

    downloads

    0

    comments

    0

    adaptations

    6-001-Epidemic-ModelingScenario
    This paper presents real-world data, a problem statement, and discussion of a common approach to modeling that data, including student responses. In particular, we provide time-series data on the...

    Keywords: datadifference equationsparameter estimationcontinuousepidemicdiscreteboarding school

    537

    views

    492

    downloads

    0

    comments

    0

    adaptations

    9-020-HeatDiffusion-ModelingScenario
    This project guides students through experimental, analytical, and numerical techniques for understanding the heat (diffusion) equation with nonhomogeneous boundary conditions. In particular,...

    Keywords: laboratoryDiffusionheat

    177

    views

    302

    downloads

    0

    comments

    0

    adaptations

    Winter is Coming! Data Nuggets Module - Adapted for Preservice Elementary Teachers
    Adaptation of Data Nuggets Module Winter is Coming! for an Elementary Education Science Methods Course

    Keywords: teacher educationscience teacher preparationData Nuggetmiddle grades (4-9)

    1914

    views

    1002

    downloads

    0

    comments

    0

    adaptations

    9-002-GroundWaterFlow-ModelingScenario
    The goals of this project are to compare a conceptual one-dimensional groundwater flow model to observations made in a laboratory setting, and to discuss the differences.

    Keywords: sgroundwater flowDarcy's Lawheat equationaquiferhydraulic headFourier's Lawsand tank

    339

    views

    614

    downloads

    0

    comments

    0

    adaptations

    1-028-SouthernSweetIcedTea-ModelingScenario
    We offer raw data collected from a webcam and a thermometer for evaluating the strength of steeping tea. We ask students to build a mathematical model using the data to predict how long the tea...

    Keywords: dataNewton's Law of Coolingteasweet tea

    289

    views

    287

    downloads

    0

    comments

    0

    adaptations

    1-073-WaterExitBottle-ModelingScenario
    We offer an experiment in which data is collected to ascertain a parameter in the differential equation formulation of Torricelli's Law for water flow out of a cylindrical container.

    Keywords: datawaterflowTorricelli's Lawbottle

    216

    views

    114

    downloads

    0

    comments

    0

    adaptations

    3-103-PullBackCars-ModelingScenario
    This activity offers analysis of a toy pull-back car: solution of a differential equation from model; data collection and parameter estimation; and adapting the model to predict maximum speed and...

    Keywords: modelingdynamicshands-ontoypull-back carpullback

    241

    views

    281

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search