You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Databases: A Study of Influenza
    This lesson introduces the student to the Influenza Research Database. Students will select Influenza genome sequences to see how they are related. Students tests hypotheses about evolutionary...

    Keywords: Bioinformatics EducationBioinformatics and Genomicsmolecular evolutionInfluenza

    1486

    views

    565

    downloads

    0

    comments

    0

    adaptations

    Lesson V - Phylogenetics
    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson V is an introduction to Phylogenetics.

    Keywords: Bioinformatics EducationBioinformatics and Genomics

    1662

    views

    2230

    downloads

    0

    comments

    2

    adaptations

    Undergraduate Research Experiences in Computational Science at a Community College
    Resource from the 2015 BioQUEST Summer Workshop

    Keywords: computer simulationscomputational modelInterdisciplinary STEMcomputational toolscommunity colleges

    1410

    views

    669

    downloads

    0

    comments

    0

    adaptations

    Global Temperature Change in the 21st Century
    This is an FMN participant modification of the TIEE module "Global Temperature Change in the 21st Century," authored by Daniel R. Taub and Gillian S. Graham in 2011.

    Keywords: ecologyIntroductoryfmnLectureUndergraduateData DiscoveryInstructional SettingAudience LevelActivity LengthMore than 1 hour

    2135

    views

    289

    downloads

    0

    comments

    0

    adaptations

    Learn biotechnology, biophysics and business through scientific thinking and innovation
    Scientific, leadership and innovation skills are also an integral framework of the curriculum. All of them together or individually are important for enhancement of knowledge, critical thinking,...

    Keywords: educationbusinessBiotechnologybiophysicsleadershiprecombinant DNAgroup workcloninginnovationscientific thinkingplasmid

    168

    views

    88

    downloads

    0

    comments

    0

    adaptations

    Microbiomes forAll: The Research Experiences in Microbiomes Network
    Poster on REMNet presented at the 2020 BIOME Institute: Cultivating Scientific Curiosity

    Keywords: undergraduate researchcourse-based undergraduate research experiencemicrobiomesmicrobiomeCUREREMNet

    1113

    views

    237

    downloads

    0

    comments

    0

    adaptations

    Learning About Protein Localization: A Lesson for Analyzing Figures in a Scientific Publication
    In order to function correctly, proteins must be localized to a specific subcellular location. We have designed this lesson to use data from the primary literature to teach students about the...

    Keywords: colocalizationimmunofluorescenceProtein localizationsignal sequencessubcellular fractionationwestern blotting

    2560

    views

    602

    downloads

    0

    comments

    0

    adaptations

    Understanding Restriction Enzyme Digests
    Prior to submitting genomic DNA for sequencing, SEA students perform a restriction endonuclease digest with several enzymes, which provides a fast and cost-effective way of quickly screening...
    1044

    views

    1051

    downloads

    0

    comments

    0

    adaptations

    Integrating Manipulatives and Animations to Visualize Holliday Junctions
    The complex molecular architecture of Holliday junctions is often challenging for undergraduate biochemistry students to conceptualize. In particular, they have difficulty translating from...

    Keywords: dna structureDNA damageDNA recombinationGene crossoverHolliday junction

    1936

    views

    366

    downloads

    0

    comments

    0

    adaptations

    Discovering Prokaryotic Gene Regulation with Simulations of the trp Operon
    The trp operon exemplifies important biological concepts, including the central dogma of molecular biology, feedback inhibition, and gene regulation. For this reason, regulation of the trp operon...

    Keywords: prokaryotesgene regulationattenuationfeedback inhibitionrepressible operontrp operon

    3894

    views

    394

    downloads

    0

    comments

    0

    adaptations

    Going Remote: An Online Adaptation to Using a Primary Cell Culture Model to Study the Neural Extracellular Matrix
    In light of the COVID-19 pandemic, instructors have modified materials to transition to a remote learning platform. The challenge for science instructors has been to design lab exercises that...

    Keywords: remote learningExtracellular matrixNeural extracellular matrixPerineuronal net

    1371

    views

    129

    downloads

    0

    comments

    0

    adaptations

    5-010-DNADegradation-ModelingScenario
    We ask students to use the system of first order linear differential equations given in a source paper and estimates of the data from laboratory procedures from a plot to estimate the parameters...

    Keywords: DNA\kinetisplasmaratpharmacokinetis

    248

    views

    140

    downloads

    0

    comments

    0

    adaptations

    Introduction to Genome Browser: What is a Gene?
    In this module, we will use a web-based visualization tool called a Genome Browser to explore the structure of a eukaryotic gene, and obtain a basic understanding of how this information is...
    729

    views

    169

    downloads

    0

    comments

    0

    adaptations

    Sequence Similarity Resource Adaptation: Exploring Ebola Virus
    This adaptation of the sequence similarity resource provides biology students with a basic set of bioinformatics concepts and tools. These concepts and tools are used to explore relationships...

    Keywords: phylogeneticsbioinformaticsEbolasequencingFASTANCBINIBLSEalgorithmsincubatorsBLASTmultiple sequence alignmentsequence similarityBLOSUM scoring matrixneighbor-joining distance matrixCourseSourcephylogram

    2122

    views

    5409

    downloads

    0

    comments

    0

    adaptations

    Targeting Misconceptions in the Central Dogma by Examining Viral Infection
    Understanding the central dogma and how changes in gene expression can impact cell function requires integration of several topics in molecular biology. Students often do not make the necessary...

    Keywords: datatranscriptionvirustranslationprotein functionmembrane transportPredictions

    2978

    views

    462

    downloads

    0

    comments

    0

    adaptations

    2017-William_Bialek-Boxes and Arrows To Differential Equations
    This material uses pictures to build kinetic models of reactions and then offers analytic solutions.

    Keywords: Michaelis-MentenEnzymesubstrateDNA\kinetis

    137

    views

    50

    downloads

    0

    comments

    0

    adaptations

    A Curious Display
    Case study on genetically modified organisms provided in English and American Sign Language.

    Keywords: geneticscase studyagricultureBiotechnologyenvironmental scienceDNAUniversal Design for LearningGMOAmerican Sign Language

    847

    views

    501

    downloads

    0

    comments

    0

    adaptations

    Hemoglobin bioinformatics
    This is an introduction to bioinformatics using hemoglobin as an example. The worksheets introduce students to resources to explore the DNA, RNA and polypeptide linear structure with a brief...

    Keywords: bioinformaticsHemoglobinBLASTsickle cell diseaseMolecular Case StudyClustal OmegaMolCaseNet

    900

    views

    1694

    downloads

    0

    comments

    0

    adaptations

    The Ames Test
    Introduction to the Ames Test, published as GSA Learning Resource

    Keywords: geneticsNIBLSEDNAames testassay

    1553

    views

    248

    downloads

    0

    comments

    0

    adaptations

    Team microBIOME Fall 2020 - DIY microbiome analysis
    This is our final team report for this year's BIOME Institute 2020. Learn about what we got up to and what we're planning for Spring 2021. If you want more information on REMNet go...

    Keywords: microbiomeDNA SubwayDIYREMNet microbiomesNephele

    1467

    views

    456

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search