You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Sting, Carry and Stock: How Corpse Availability Can Regulate De-Centralized Task Allocation in a Ponerine Ant Colony
    Model showing that organization of work through a common stomach system can allow Ectatomma ruidum to collectively forage for food in a robust, reactive and reliable way

    Keywords: differential equationsmodelinginsect colonysystems theory

    924

    views

    254

    downloads

    0

    comments

    0

    adaptations

    2011-Nguyen-Shi-Modeling the absorption circulation and metabolism of tirapazamine
    This apparently is a student project and it develops the kinetic model, uses Matlab for numerical solution, analytic solution and numerical solution.

    Keywords: absorptionMichaelis-MentenMetabolismdrug metabolismcirculation

    108

    views

    36

    downloads

    0

    comments

    0

    adaptations

    Fitzhugh-Nagumo Model
    The FitzHugh–Nagumo model describes a prototype of an excitable system (e.g., a neuron).

    Keywords: differential equationsmathematical modeldifferential equation modelordinary differential equation modelneuroscienceexcitable

    1176

    views

    218

    downloads

    0

    comments

    0

    adaptations

    QUBES: Building a community to promote undergraduate quantitative biology education
    QUBES is designed to improve communication among educators, assist faculty in understanding and implementing novel content and teaching strategies in their classrooms, and create an academic reward...

    Keywords: QUBES

    1408

    views

    427

    downloads

    0

    comments

    0

    adaptations

    2020-TeachingModule-GeometricBehaviorOfLinearSysteModeling
    This module concentrates on the geometric properties of a system of 2 linear, homogeneous first order differential equations in 2 variables as dictated by the corresponding eigenvalues. Students...

    Keywords: modulelinear systemsdigoxinTeaching Module

    5813

    views

    514

    downloads

    0

    comments

    0

    adaptations

    2023-Roberto_Camassaa-Richard_McLaughlina-Tauberian identities and the connection to Wile E Coyote physics
    The application of the motion of a vertically suspended mass-spring system released under tension is studied focusing upon the delay timescale for the bottom mass as a function of the spring...

    Keywords: HangtimeTauberian IdentitiesRoad RunnerWile E. Coyote

    223

    views

    60

    downloads

    0

    comments

    0

    adaptations

    2016-Starling-EtAl-Local Brewery - A Project for Use in Differential Equations Courses
    We describe a modeling project designed for an ordinary differential equations (ODEs) course using first-order and systems of first-order differential equations to model the fermentation process in...

    Keywords: BEERFermentationbrewery

    131

    views

    50

    downloads

    0

    comments

    0

    adaptations

    2009-Marten-EtAl-Derivation and analysis of an ordinary differential equation for epilepsy dynamics
    In this paper we describe how an ordinary differential equation model of corticothalamic interactions may be obtained from a more general system of delay differential equations.

    Keywords: delayepilepsy dynamicsepilepsybistabilityseizure activity

    90

    views

    37

    downloads

    0

    comments

    0

    adaptations

    2009-Das-EtAl-Bioeconomic harvesting of a pre-predator fishery
    This paper deals with the problem of non-selective harvesting of a prey–predator system by using a reasonable catch-rate function instead of usual catch-per-unit-effort hypothesis.

    Keywords: predator-preyharvestingPontryagin’s maximum principlebioeconomicbionomic equilibriumbiotechnical productivitycatch-rate functionoptimal equilibrium

    208

    views

    35

    downloads

    0

    comments

    0

    adaptations

    2014-Chivers-EtAl-Predator-prey systems depend on a prey refuge
    We present an agent-based model which does not require the factors or constraints of previous models to reproduce all six patterns in persistent populations.

    Keywords: Individual & Agent Based Modelingpredator-preythink-pair-shareslynxrefugeprey switchingMustela-Clethrionomys systempatter oriented

    109

    views

    36

    downloads

    0

    comments

    0

    adaptations

    5-002-RelationshipDynamics-ModelingScenario
    The different possible dynamics of a two-person romantic relationship are modeled -- as a linear two dimensional system of equations -- and analyzed.

    Keywords: love affairRomeo and Juliet

    184

    views

    324

    downloads

    0

    comments

    0

    adaptations

    Antigen presentation and cytotoxic T lymphocytes (CTLs): elucidating a common roadblock for students
    Active learning resource for pre-Nursing anatomy and physiology lecture explaining antigen presentation to CTLs and how the CTLs recognize and destroy the pathogen using Biointeractive animations...

    Keywords: Resources @ HHMI - BioInteractiveimmune systemAnatomy & PhysiologyCell communication

    1036

    views

    405

    downloads

    0

    comments

    0

    adaptations

    Draft Version: Energy Balance Models
    This module introduces the student to the process of mathematical modeling.

    Keywords: modulemathematical modelingbenergy balanceclimate modelDIMACSResources @ DIMACSclimatein-class activityResources @ QUBES - Teaching & Referencescienceexperiment

    1287

    views

    240

    downloads

    0

    comments

    0

    adaptations

    R for biologists
    An introductory guide to data analysis in R for life sciences researchers.

    Keywords: R

    984

    views

    391

    downloads

    0

    comments

    0

    adaptations

    2016-Devaki-Swathi-System of Differential Equations in Prey Predator Model
    Predation relationship exists in ecological niches throughout the world. This is the species interaction which will be mathematically analyzed and embodied in this work.

    Keywords: extinctionCoevolutionpredatorLotka Volterra equationspre

    148

    views

    63

    downloads

    0

    comments

    0

    adaptations

    2015-Joshi-EtAl-Optimal control of an SIR model with changing behavior through an education campaign
    We study stability analysis and use optimal control theory on the system of differential equations to achieve the goal of minimizing the infected population (while minimizing the cost).

    Keywords: SIR modelsvaccinepopulationwater treatmentsusceptibleeducation campaignminimizing costinfected

    115

    views

    54

    downloads

    0

    comments

    0

    adaptations

    2015-Beckmann-Sanchez-Cache Calculus-Modeling Caches through Differential Equations
    We present cache calculus, a technique that models cache behavior as a system of ordinary differential equations, letting standard calculus techniques find simple and accurate solutions of cache...

    Keywords: discretecachecache calculus

    107

    views

    70

    downloads

    0

    comments

    0

    adaptations

    2014-Rogert_Smith-Mathematical Modeling of Zombies
    Here, we use diffusion to model the zombie population shuffling randomly over a one-dimensional domain.

    Keywords: kineticsZombiezombificationinteraction times

    119

    views

    65

    downloads

    0

    comments

    0

    adaptations

    2014-Niemann-Miklos-Simple Method for Estimation of Parameters in First Order Systems
    A simple method for estimation of parameters in first order systems with time delays is presented in this paper.

    Keywords: delaytime delystep response

    83

    views

    50

    downloads

    0

    comments

    0

    adaptations

    2012-Yuan_Yuan-A coupled plankton system with instantaneous and delayed predation
    We present two simple plankton population models: one has instantaneous predation, another has delayed predation.

    Keywords: phytoplanktonbifurcationorbitsherbivorous zooplanktoneffect of fishmaturation time delay

    107

    views

    35

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search