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    ODD Description of the BEFORE Beech Forest Model
    This is a supplemental resource from ABM

    Keywords: case studytextbookNetLogoagent-based modelingODD protocol

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    Open science, open data, open source projects for undergraduate research experiences
    Resource from the 2015 BioQUEST Summer Workshop
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    Meiosis Remodeled: Inclusion of New Parts to Poppit Bead Models Enhances Understanding of Meiosis
    A long-standing tradition uses strings of poppit beads of different colors to model meiosis, especially to show how segments of paired homologous chromosomes are recombined. Our use of orthodontic...

    Keywords: meiosischiasma formationchromosome recombination

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    DNA and Knot Theory
    This module introduces knot theory in the context of understanding the packing of DNA. It is intended for an introductory biology audience.

    Keywords: DNAGenetic InformationTopologyKnot Theory

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    Regulation Across Scales: Data Points Icebreaker Jigsaw
    Students examine regulation at cellular, physiological, and ecological scales in a data-based jigsaw to explore how double-negative logic operates across biological systems. This was used as a...

    Keywords: pathwaysgene regulationtrophic cascadesregulationcross-scalecholesterol synthesisLac OperonYellowstone

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    2008-Chernyshov-EtAl-The Problem of Modelling of Economic Dynamics in Differential Form
    The authors have tried to analyze procedures of the construction of differential equations that are employed for modeling of macroeconomic processes. The results prove to be rather unexpected.

    Keywords: Fredholm integral equation ofLeontief’s modelmacroeconomic processes

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    2014-Eckhoff-EtAl-Fun with maths-exploring implications of mathematical models for malaria eradication
    . In this note, four examples demonstrate both the effects of model structures and assumptions and also the benefits of using a diversity of model approaches fomalaria eradication strategies.

    Keywords: vaccinemalariamigrationeradicationseasonality

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    2004-Jones-Song-Thomas-Controlling wound healing through debridement
    In this article, a system of differential equations that models slough/wound interaction is developed.

    Keywords: bacteriawound healinghealingderidingisocline

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    2000-Idels-Wang-Harvesting Fisheries Management Strategies With Modified Effort Function
    This study concludes that a control parameter beta (the magnitude of the effect of the fish population size on the fishing effort function E), changes not only the rate at which the population goes...

    Keywords: sustainabilityfishFishingmanagementharvestfisherstrategyoverfishing

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    2014-Chivers-EtAl-Predator-prey systems depend on a prey refuge
    We present an agent-based model which does not require the factors or constraints of previous models to reproduce all six patterns in persistent populations.

    Keywords: Individual & Agent Based Modelingpredator-preythink-pair-shareslynxrefugeprey switchingMustela-Clethrionomys systempatter oriented

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    2012-Brian_Ingalls-Mathematical_Modelling_in_Systems_Biology
    This text provides an introduction to dynamic mathematical modeling of cellular processes. The emphasis is on using computational tools to investigate models of cellular phenomena.

    Keywords: biologygene regulatory networksModelsmetabolic networkssignal transduction pathwayselectrophysiology

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    2009-Brian_Winkel-Modelling_Growth_Of_an_OilSlick
    An oil-slick spreads at sea. From time to time, but irregularly, a helicopter is dispatched. On each trip, it arrives over the slick, the pilot takes a picture, waits 10 minutes, takes another, and...

    Keywords: differential equationssimulationparameter estimationdifference equation

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    2019-Hu-Treinen-One-step_method_for_modelling_longitudinal_data_with_differential_equations
    This study proposes a new approach to estimate the parameters in differential equation models used to describe non-linear trajectories of longitudinal data.

    Keywords: simulationparameter estimationshoppingfittingbehaviour

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    3-092-WirelessPower-ModelingScenario
    We present an engineering application (wireless power transmission) modelled by a coupled system of two linear second-order differential equations with constant coefficients. One equation is...

    Keywords: DESMOSwireless power transmissionelectric circuitsKirchhoff's Voltage Law

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    5-036-HalfCarVibration-ModelingScenario
    Vibration vehicle models provide an opportunity to integrate vehicle-based vibrations into a mechanical engineering vibrations course. The project is on a multiple-degree-of-freedom (MDOF)...

    Keywords: vibrationvehiclehalf-car modelfinite element analysisshock absorberssuspension

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    Big Data, Graphs, and Prediction
    In this activity, students are introduced to graphing and modeling data in a step-wise fashion. Real data of covid-19 deaths over time are used to incrementally ask students to fit the data to...

    Keywords: epidemiologygraphingLogarithmsexponential growthqbcccovidChoosing modelsCreate graphsInterpret graphsConcepts in Statistics

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    10-001-TilingHallway-ModelingScenario
    Students investigate difference equations through tiling hallways. They observe patterns in the tiling which lead to a difference equation. Solutions will be calculated by iteration. and the shift...

    Keywords: Geometryiterationtilingrecurrenceshift operatorpatternsclosed formanalytic solution

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    Integrating Manipulatives and Animations to Visualize Holliday Junctions
    The complex molecular architecture of Holliday junctions is often challenging for undergraduate biochemistry students to conceptualize. In particular, they have difficulty translating from...

    Keywords: dna structureDNA damageDNA recombinationGene crossoverHolliday junction

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    2014-Hrydziuszko-EtAl-Mathematical Two-compartment Model of Human Cholesterol Transport
    We develop a two-compartment mathematical model to investigate cholesterol transport in the circulatory system and its de novo synthesis in the liver.

    Keywords: metabolic syndromecompartmentcholesteroltwo-compartment modelcholesterol transport

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    2009-Noakes-Sleigh-Mathematical models for assessing the role of airflow on the risk of airborne infection in hospital wards
    Understanding the risk of airborne transmission can provide important information for designing safe healthcare environments with an appropriate level of environmental control for mitigating risks.

    Keywords: infectioncompartmenthospitalventilationairbornesthochasticWells–Riley

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