You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Michaelis-Menten Enzyme Kinetics
    In this simulation, equations used in enzyme kinetics (Michaelis-Menten, Eadie-Hofstee, Dixon, and Lineweaver-Burk) are modeled under various conditions.

    Keywords: ExcelResources @ ESTEEMMichaelis-Mentenenzymesenzyme kinetics

    1478

    views

    322

    downloads

    0

    comments

    0

    adaptations

    2007-Helfgott-Seier-Some Mathematical and Statistical Aspects of Enzyme Kinetics
    We will analyze some basic ideas behind enzyme kinetics, which allow us to deal with separable and linear differential equations as well as realize the need to use power series.

    Keywords: kineticsEnzymeexperimental dataregresion

    163

    views

    53

    downloads

    0

    comments

    0

    adaptations

    2010-Roberto_Munoz-Alicea-Mathematical Model for Enzyme Kinetics-Multiple Timescales Analysis
    We study a basic model for enzyme substrate reaction. Through several assumptions and via nondimensionalization, we simplify the equations.

    Keywords: kineticsEnzymesubstratenondimensionalizationmultiple timescales

    95

    views

    50

    downloads

    0

    comments

    0

    adaptations

    1987-Claude-Marmasse-Studies on differential equations of enzyme kinetics-Biomolecular scheme
    The integral curve is compared with the solutions given by the two classical approximations to the problem: it is shown that the steady-state approximation is to be preferred to the rapid...

    Keywords: steady-state modelisoclinesenzyme kinetics

    82

    views

    40

    downloads

    0

    comments

    0

    adaptations

    Enzyme Kinetics: How Quickly Can Acetylcholinesterase Break Up Your Thoughts?
    This module contains exercises designed to help upper-level cell biology students understand the common graphical methods used to evaluate enzyme activity and to see the impact of inhibitors on...

    Keywords: cell biologyQuantitative reasoninginterdisciplinarylinear modelsInterpreting GraphsNIQBC2. Data and GraphsC4. mathematical modelsnonlinear models

    377

    views

    184

    downloads

    0

    comments

    0

    adaptations

    Unwrapping Enzyme Kinetics
    Enzyme rates and kinetics are key components used by biochemists to understand how enzymes function. However, students often find it difficult to understand how these experiments are performed and...

    Keywords: kineticsstructure-functionenzymescatalysis

    2421

    views

    697

    downloads

    0

    comments

    0

    adaptations

    1996-D_Erdman-MM_Morelock-A Study of Kinetics
    This paper introduces new and old features of the SAS System for the estimation and simulation of systems of first-order differential equations with emphasis on examples in kinetics.

    Keywords: simulationkineticsparameter estimationEnzymesubstratesavingscompartmentstomachbloodginseng

    138

    views

    39

    downloads

    0

    comments

    0

    adaptations

    Breaking Bricks: A Hands-On Model of Enzyme Kinetics and Inhibition
    Enzyme kinetics and the impacts of inhibitors on the enzyme's maximal velocity and ability to bind substrates are important topics in cell biology and biochemistry. However, these topics can be...

    Keywords: kineticsEnzymecompetitive inhibition

    3144

    views

    710

    downloads

    0

    comments

    0

    adaptations

    2017-William_Bialek-Boxes and Arrows To Differential Equations
    This material uses pictures to build kinetic models of reactions and then offers analytic solutions.

    Keywords: Michaelis-MentenEnzymesubstrateDNA\kinetis

    111

    views

    47

    downloads

    0

    comments

    0

    adaptations

    Teaching the Biological Relevance of Chemical Kinetics Using Cold-Blooded Animal Biology
    This lesson plan was created to support non-chemistry major students in making connections between chemical kinetics and biological systems. Chemical kinetics is often viewed by students as an...

    Keywords: kineticsMetabolismEctothermPoikilotherm

    1148

    views

    397

    downloads

    0

    comments

    0

    adaptations

    Investigating Enzyme Structure and Function Through Model-Building and Peer Teaching in an Introductory Biology Course
    A foundational knowledge of the relationship between structure and function is critical to understanding how enzymes work. The seemingly invisible nature of these molecular interactions makes it...

    Keywords: structure-functionEnzymeallosteric regulationcompetitive inhibitionfeedback inhibitionnoncompetitive inhibitionproductsubstrate

    4473

    views

    583

    downloads

    0

    comments

    0

    adaptations

    It's a Substrate... It's a Protein...No - It's an Enzyme! Teaching Using 3D Serine Protease Physical Modeling Activities to Confront Misconceptions.
    Reported misconceptions of enzyme-substrate interactions highlight the necessity for better, targeted instructional tools and assessments. A series of active learning activities with corresponding...

    Keywords: Protein StructureEnzymes-Substrate InteractionsNoncovalent InteractionsGeometric ComplementaryElectronicsStereochemistrySerine Proteases

    2788

    views

    352

    downloads

    0

    comments

    0

    adaptations

    Isolation and Functional Analysis of a Pancreatic Enzyme in an Introductory Student Lab
    Structure and function are correlated at all levels of biology. This topic is typically addressed early in an undergraduate class in general or molecular biology before students have gained much...

    Keywords: Protein StructureproteaseEnzymechemical bondscatalysissolubility

    3410

    views

    175

    downloads

    0

    comments

    0

    adaptations

    2006-Juska-Gedminiene-Ivanec-Growth of Microbial Populations-Mathematical Modeling-Laboratory Exercises-Model-Based Data Analysis
    The aim is to teach the students to use a fresh approach to the problems they are familiar with, to come up with an articulate verbal model after a mental effort, to express it in rigorous...

    Keywords: population growth ratelogistic equationVerhulst equationgeneration timelag time

    187

    views

    37

    downloads

    0

    comments

    0

    adaptations

    2012-Shargel-Yu-AccessPharmacy-Applied Biopharmaceutics and Pharmacokinetics
    Step by step formation of drug absorption models is shown with many good graphics of system and plots. Solutions are offered but no solution methods are shown.

    Keywords: Michaelis-MentenEnzymesubstratecompartmentpharmacokineticsrate constanturinary dataabsorption rate

    73

    views

    32

    downloads

    0

    comments

    0

    adaptations

    2018-Franklin_Chen-Teaching Kinetics through Differential Equations Constructed with a Berkeley MadonnaTM Flow Chart Model
    This kinetics manual has been successfully implemented in Physical Chemistry at UW-Green Bay in the fall semester of 2017, with the students’ success rate greater than 80%.

    Keywords: kineticsPhysical ChemistryLotka Volterra equationsBerkeley Madonna platform

    601

    views

    54

    downloads

    0

    comments

    0

    adaptations

    2012-Vivek_Patel-Chemical Kinetics
    The book is designed to help the reader, particularly students, researchers, research scholars, scientists, chemists and industry fraternity of chemistry and allied fields; understand the mechanics...

    Keywords: kineticschemistryreaction

    137

    views

    39

    downloads

    0

    comments

    0

    adaptations

    2004-Mitchell-von Meien-Krieger-Dalsenter-A review of recent developments in modeling of microbial growth kinetics
    Mathematical models are important tools for optimizing the design and operation of solid-state fermentation (SSF) bioreactors. Such models must describe the kinetics of microbial growth.

    Keywords: Filamentous Fungisolid-state fermentationgrowth kineticsdiffusion-reactionoxygen transfer

    120

    views

    45

    downloads

    0

    comments

    0

    adaptations

    2017-Jean-Roux-Mathematical Models in Air Quality Problems
    Presents many models with analysis in air quality control. Starts with chemical kinetics models and builds complexity to PDE models.

    Keywords: air pollution effects on forest ecosystemsfinite volume methodboundary layerchemical kineticsfinite differenceemissionsdepositionsadvection

    146

    views

    59

    downloads

    0

    comments

    0

    adaptations

    2015-G_Knott-Chemical Kinetics - Simple Binding F + G to and from B
    The study of this reaction, F + G goes to and from B, is common in chemistry and biochemistry. For example, F could be a hormone or drug and G the associated receptor sites.

    Keywords: bindingreactionchemical kineticsdeterministicBiochem Labsprobabilistickinetic reaction

    85

    views

    69

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search