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    Applying Universal Design for Learning (UDL) Principles to Case Studies
    This is a presentation for the 2022 BIOME meeting.
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    3-085-SimplePendulum-ModelingScenario
    Thestudent is asked to derive and solve a differential equation that gives the position (angle

    Keywords: Newton's Second Law of Motionpendulumkinetic energypotential energyConservation of Energytinitial conditionssmall angle approximationTaylor polynomialpercent error

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    1-036-NeutralBuoyancy-ModelingScenario
    An object may hang suspended at, say, ten foot depth in a column of water if at ten feet underwater the density of the object equals the density of water. We study this phenomenon

    Keywords: DensitybuoyancyArchimedes’ Principlefloatneutral buoyance

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    7-008-MachineReplacement-ModelingScenario
    Students build an integro-differential equation model using a convolution for machine replacement strategies for two different machine failure models.

    Keywords: Probabilityreplacement numberLaplace transformindustrial engineeringmachineconvolutiondistributiojstep functionderivative definition

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    10-001-TilingHallway-ModelingScenario
    Students investigate difference equations through tiling hallways. They observe patterns in the tiling which lead to a difference equation. Solutions will be calculated by iteration. and the shift...

    Keywords: Geometryiterationtilingrecurrenceshift operatorpatternsclosed formanalytic solution

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    Regression: Tree Rings and Measuring Things
    Students develop scatter plots of growth rings by tree diameters and determine the equation of their best fit line.

    Keywords: NIMBiosregressiontree ringsline of best fit

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    GEA Introductory lesson on RNA-Seq
    This RNA-Seq lesson uses the CyVerse VICE Platform and Jupyter notebooks to examine the expression of the leptin gene in samples from a mouse experimental design evaluating diet (high-fat vs....

    Keywords: data sciencebioinformaticsGenome BrowserRNAseqhigh throughput sequencingmRNAAlignmentNCBI Sequence Read Archive

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    HITS: A network to create inquiry-based case studies that make high-throughput approaches and discovery accessible
    HITS brings together interdisciplinary groups of HT researchers and instructors to produce authentic HT case studies that can be implemented in a variety of courses, allowing students to analyze...

    Keywords: case studieshigh-throughputHITS

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    Cleaning Biodiversity Data: A Botanical Example Using Excel or RStudio
    Access and clean an open source herbarium dataset using Excel or RStudio.

    Keywords: Exceldata in the classroomRStudiobiodiversity informaticsnatural history collectionsHerbariaData cleaning

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    Piwi Matters
    This case focuses on understanding structure and function relationships in Piwi, a protein that is critical for germline stem cell function and development of eggs in the fruit fly ovary.

    Keywords: Stem cellsmolecular visualization and analysis3D protein structure /function analysisPiwiPDBMolecular Case Study

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    Demography from "virtual cemeteries"
    This module is a modification of the Lanza module in TIEE Volume 8. Rather than requiring students to visit cemeteries outside of class, this modification has students collect data from online...

    Keywords: ecologyResources @ ESA - TIEEdemographysurvivorshiplife tables

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    Following the Data
    The video and exercise provides insight into how researchers are using digital data resources to investigate biodiversity in prairie fen wetlands.

    Keywords: data in the classroomprocess of sciencebiodiversity informatics

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    A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!
    This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.

    Keywords: data sciencebioinformaticsnext generation sequencingquality controlFASTQgenomicsprogrammingNIBLSElinuxmicrobiomeIllumina sequencingcommand lineFASTQEFASTPNGS analysisterminalMacemojiPhred scoreTrimmingshort read

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    Competition under the Sea: Exploring the competitive interaction between native and non-native seagrasses in the Caribbean
    A mini-case study that uses real-world data to explore the competitive interaction among seagrasses.

    Keywords: ecologycompetitionconservation ecologywater resource managementseagrassCaribbean

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    The Polar Bear of the Salt Marsh? Warming Tolerance Limits of Local Species
    National Center for Case Study Teaching in Science- In the adaptation exercise, students explore connections between saltmarsh sparrow declines and declining populations of local species that live...

    Keywords: Coastal wetlandsConnecticutmanagementnortheastsea-level risesalt marsh

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    HITS: A network to promote high-throughput (HT) approaches through inquiry-based case studies
    Poster on the HITS project presented at the 2018 Annual Fall Conference for the National Center for Case Study Teaching In Science.

    Keywords: case studiesbig dataHITSHigh-throughput Discovery Science & Inquiry-based Case Studies for Today’s StudentsAnnual Fall Conference for the National Center for Case Study Teaching In ScienceBuffalo case studyHigh-throughput (HT) approaches

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    Morphological, Anatomical and Molecular Analysis of Plant Phylogeny and Diversity
    In this lab, students perform phylogenetic analyses on morphological, anatomical and molecular data, and compare.

    Keywords: morphologyphylogenylaboratoryplantsmolecular analysisstele architecture

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    Phylogeny of Land Plants
    In this lab, students review the characteristics of the major land plant lineages. Then they perform phylogenetic analyses based on morphological characters.

    Keywords: morphologyphylogenylaboratoryplantsmolecular analysis

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    Using Data in Limnology
    Poster on the interdisciplinary study of limnology as a "PEAK" integrative learning experience at Concordia Collegepresented at the 2018 QUBES/BioQUEST Summer Workshop

    Keywords: student researchinterdisciplinary educationlimnologyeco-informaticsSummer Workshop 2018

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    Freezer Full of Fossils v2.0
    The Long Term Evolution Experiment started by Dr. Richard Lenski provides a rich dataset to help students explore concepts of fitness, replication, and adaption.

    Keywords: graphingfitnessadaptationcompetitionSpreadsheet

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