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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Phylogeny of Land Plants
    In this lab, students review the characteristics of the major land plant lineages. Then they perform phylogenetic analyses based on morphological characters.

    Keywords: morphologyphylogenylaboratoryplantsmolecular analysis

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    Data from: Advancing population ecology with integral projection models: a practical guide
    Review important resources for building IPMs and provide a comprehensive guide, with extensive R code, for their construction.

    Keywords: IPMintegral projection modelsdemographyelasticitylife historymatrix projection modelpopulation growth ratepopulation projection modelsensitivitystage structurevital ratesResources @ DryadResources @ QUBES - Data

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    BioNumbers-the database of key numbers in molecular and cell biology
    BioNumbers is a database of key numbers in molecular and cell biology—the quantitative properties of biological systems of interest to computational, systems and molecular cell biologists

    Keywords: dataResources @ BioNumbersNumbersestimationdatabaseResources @ QUBES - Teaching & Reference

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    Leaf cutter ant foraging
    This module introduces students to leaf-cutter ants in the rainforests of Panama. Students derive their own research hypotheses regarding ant foraging or allometric scaling relationships.

    Keywords: leaf cutter antsforagingallometrylinear regressiongraphingdata visualizationResources @ AIMSbody size

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    What is Science?
    This video has a philosophical focus and explores the nature of science. We’ll hear about how science is both a body of knowledge and a process. Peer review and confirmation bias will also be covered.

    Keywords: videosStudent misconceptionsScience Forwardscience basics

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    Using Data in Limnology
    Poster on the interdisciplinary study of limnology as a "PEAK" integrative learning experience at Concordia Collegepresented at the 2018 QUBES/BioQUEST Summer Workshop

    Keywords: student researchinterdisciplinary educationlimnologyeco-informaticsSummer Workshop 2018

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    Painting turtles: an introduction to species distribution modeling in R
    This module uses R software to introduce students to the process of accessing databases and building species distribution models based on occurrence records.

    Keywords: RResources @ ESA - TIEEfmnDIGspecies distributionshabitat suitabilitycooperative learningjigsaw

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    Freezer Full of Fossils v2.0
    The Long Term Evolution Experiment started by Dr. Richard Lenski provides a rich dataset to help students explore concepts of fitness, replication, and adaption.

    Keywords: graphingfitnessadaptationcompetitionSpreadsheet

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    Have fish assemblages recovered from the legacy of acid rain?
    This module provides a framework for upper-level ecology students to learn about limiting factors for stream fish diversity, using data from Shenandoah National Park and gaining skills in...

    Keywords: Problem based learningdiversitycooperative learninglimiting factorsaquatic ecosystemspyramid examlab reports

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    QUBES: a collaboration and professional development platform for quantitative biology education
    Presentation given at BEER 2017 in Normal, IL

    Keywords: QUBESBEERResources @ QUBES - Teaching & Referencebeer17

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    A Growing Concern: Sustaining Soil Resources through Local Decision Making
    This module addresses this need by providing students the opportunity to examine the differences between intensively managed agricultural landscapes (e.g. grazelands, conventional tillage) and...

    Keywords: sustainabilityenvironmental sciencegeologysoil scienceResources @ InTeGrate

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    1994-T_Gruszka-A_Balloon_Experiment_in_the_Classroom
    The experiment consists of dropping a balloon from two different heights and recording the time it takes to hit the floor. The following experiment involves a balloon, a stopwatch, and a...

    Keywords: differential equationsresistancegravityfree fallaccelerationballoon

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    3-071-WirelessTelegraphy-ModelingScenario
    This project has three parts, (1) done at home, (2) and (3) in class. In (1) we recall how to solve second order differential equations with constant coefficients and simple source functions. In...

    Keywords: bRLC circuitresonancebeatscurrentwireless telegraphyLC circuit

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    SIMIODE Spring 2024 Webinars - WikiModel
    WikiModel is cloud-based application and requires no installation and is run via a web-browser to facilitate rapid implementation. Equations are typed in as they appear in a textbook. ODEs are...

    Keywords: modelingSoftwaretoolapplicationWikiModelmodeling cycle

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    Colorful wings send messages: Why are butterfly wings colorful?
    Red postman butterflies live in tropical rainforests and have a mix of red, yellow, and black on their wings. These bright colors may warn predators or attract mates. Explore whether color alone or...

    Keywords: Quantitative reasoningadaptationpredationfield workEvolution by natural selection and mutation

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    The Stomata Lab. What the past can tell us about our future - using fossil and modern plants to model atmospheric carbon dioxide
    Students will develop a mathematical model of the relationship between atmospheric CO2 and the number of stomata on a leaf (Stomata Index). They will evaluate the model graphically, statistically,...

    Keywords: introductory biologyQuantitative reasoninginterdisciplinaryclimate changeregressionEcology and EvolutionStomataNIQBC2. Data and GraphsC4. mathematical modelsC3. Statistical AnalysisSmithsonian

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    The Molecular CaseNet Pipeline for Authoring, Piloting, and Evaluating Molecular Case Studies
    This poster provides an overview of the pipeline for authoring, piloting, and reviewing molecular case studies for publication in Molecular CaseNet.

    Keywords: resources @ Molecular CaseNet

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    CYTOSKELETON - Microtubule Dynamics in the Cell Cycle
    This module contains exercises designed to help upper-level cell biology students understand the dynamics of microtubule polymerization and depolymerization within the cell cycle and how cancer...

    Keywords: cell biologyQuantitative reasoningInterdisciplinary STEMInterpreting GraphsCytoskeletonScientific reasoningdimensional analysisNIQBC2. Data and GraphsC6. Quantitative LanguageC1. Numeracy

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    1-132-DigoxinElimination-ModelingScenario
    We model the concentration of digoxin eliminated from the human body at a rate proportional to the concentration. This is a ``first-order reaction'' in the language of pharmacokinetics -- the study...

    Keywords: nullclinespharmacokineticsdigoxindrug eliminationtwo compartment

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    Sounds of the Tropics: Part 2. How are frogs responding to hurricanes, droughts, and climate change?
    This online module explores the response of a tropical frog community to hurricanes, drought, and climate change. We use acoustic monitoring and occupancy modeling to understand how frog...

    Keywords: climate changefrogsspecies distributionsdroughtnatural disturbanceshurricanesPuerto Ricooccupancy modeling

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