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Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    SIR BuildIt
    An introduction to epidemiological models using interactive Excel worksheets

    Keywords: modelinginfectious diseaseInfectious Disease ModelingSIR modelsSIR

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    NMDS to Study Dead Wood Fungi Communities in Parks of New Jersey
    Students use dead wood (saproxylic) fungi occurrence data from New Jersey, USA collected by students and faculty of Kean University to learn the basics of community ecology. Simple NMDS ordination...

    Keywords: RRStudioCommunity EcologyBioinformatics Educationbiodiversity informaticsNMDSfungiordination

    1721

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    1274

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    Estimating Tree Heights: Right Triangle Trigonometry
    This module introduces basic trigonometry calculations in the context of understanding tree height calculations. It is intended for an introductory biology audience.

    Keywords: ecologyTrigonometryTrigonometric Functions

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    Species-Area Relationships
    This module introduces species-area curves in the context of understanding spatial diversity patterns. It is intended for an introductory biology audience.

    Keywords: ecologyexponential equationsOpenStaxlogarithmic equations

    958

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    208

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    Data Management Adaptation: Correlating Forest Community Dynamics to Climate
    Students use vegetation structure data from the National Ecological Observatory Network to understand necessary steps of data management from data collection to data analysis by correlating...

    Keywords: forest ecologydata managementspreadsheetsCommunity DynamicsNEONDIGNational Ecological Observatory Networkbiomass

    2243

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    1534

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    Fitzhugh-Nagumo Model
    The FitzHugh–Nagumo model describes a prototype of an excitable system (e.g., a neuron).

    Keywords: differential equationsmathematical modeldifferential equation modelordinary differential equation modelneuroscienceexcitable

    1252

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    ODD Description of the BEFORE Beech Forest Model
    This is a supplemental resource from ABM

    Keywords: case studytextbookNetLogoagent-based modelingODD protocol

    1221

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    Critical Zone Science Part II
    As part of our effort to model the redwood forest water budget, we used the InTeGrate Unit 5.2 to put numbers to pathways.
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    Critical Zone Science
    My class used Water Balance of a Tree (Unit 5.1) to begin quantifying the fundamental pathways for water movement within a forest. The ultimate goal was to model transpiration of the redwood forest...
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    Outstanding Oaks: Quercus Phenology at NEON Sites
    This resource uses an app hosted on QUBES to visualize similarities and differences in Quercus phenology at three NEON sites in California, Florida, and Massachusetts.

    Keywords: ecologyphenology

    2789

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    1183

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    Environmental Drivers of Ecosystem Carbon Fluxes from Minutes to Years
    Students build on fundamental concepts of ecosystem production and carbon cycling, combining this knowledge with open long-term data from ecological and meteorological networks to uncover the...

    Keywords: climate changecarbonPlant EcologyBiogeochemistryResource Typecarbon cyclingproductivitynet ecosystem productiongross primary productionecosystem respirationcarbon fluxes

    3852

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    1977

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    Counting the Forest and the Trees: Quantitative Undergraduate Biology Education and Synthesis (QUBES) is a tool for Vision and Change
    Presentation focusing on how QUBES plans to improve learning opportunities for all students enrolled in undergraduate biology courses, presented at Botany 2015.

    Keywords: QUBEScommunityconferencedigital tools

    1495

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    How Many Salamanders are in the forest? Testing capture-recapture
    Collecting data on how populations respond to environmental change requires accurate estimates of population sizes. This activity explores one method for estimating population sizes across three...

    Keywords: salamanderCapture mark-recaptureAudience level - Introductory UG - majorsAudience level - Introductory UG - non-majors

    2097

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    931

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    Using primary literature to teach data literacy
    Presentation by Bridget Conneely made as part of the "Bringing Research Data to the Ecology Classroom: Opportunities, Barriers, and Next Steps” Session at the Ecological Society of American...

    Keywords: Ecological Society of America

    1322

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    375

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    EREN PFPP Species Composition Curriculum Module with Data
    In this lab, students will learn foundational concepts of forest community dynamics and apply quantitative skills to data analysis and interpretation activities. Students will use tree plot data...

    Keywords: forest ecologyecologydata analysisdata in the classroomCommunity Ecologyscience educationcourse-based undergraduate research experiencecurriculum materialsPlant EcologyPlant community assemblyCollaborative researcheren

    1892

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