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    2018-Winkle-Igoshin-Bennett-Josic-Ott-Modeling_Mechanical_Interactions_in_Growing_Populations_of_Rod-Shaped_Bacteria
    Here, we present an agent-based model that allows growing cells to detect and respond to mechanical interactions.

    Keywords: bacteriaagent-basedpopulationbrod-shapedcellular growth

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    2019-Zhu_EtAl-Partial_differential_equation_modeling_of_rumor_propagation
    This paper defines a spatial distance in online social networks by clustering and then proposes a partial differential equation model with a time delay.

    Keywords: social networksrumorpropogation

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    6-004-VillageEpidemic-ModelingScenario
    Students are offered data from a plague epidemic that occurred in the middle of the seventeenth century in Eyam, a small English village. With only two assumptions offered to students they...

    Keywords: SIR modelsepidemicsusceptibleinfectiveremovedEyamEnglish village

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    1-011A-Kinetics-ModelingScenario
    We help students see the connection between college level chemistry course work and their differential equations coursework. We do this through modeling kinetics, or rates of chemical reaction.

    Keywords: kineticsLaw of Mass Actionfittingorder of reactionchemical reaction

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    1-061-PotatoCooling-ModelingScenario
    We model the cooling of a baked potato and compare it to student-collected data.

    Keywords: least sum of square errorsNewton's Law of Coolingcoolingpotato

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    1-101-ClassMMDeathImmigration-ModelingScenario
    We offer students an opportunity to generate unique data for their team on a death and immigration model using m&m's and then pass on the data to another student team for analysis with a model they...

    Keywords: simulationimmigrationdata collectiondeath

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    1-111-SpreadOfInformation-ModelingScenario
    Students perform experiments to model spread of information within a population. Students collect data, determine essential components and parameters and build a mathematical model culminating with...

    Keywords: datalogisticracismprejudicemisinformationmemesspreaddisinformationinformationliesGoogle Trendscoinspennies

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    1-137-SheepGraze-ModelingScenario
    In this activity, students will apply graphical analysis (such as phase lines) to determine the long-term predictions of a differential equation model for pasture grass using two different formulas...

    Keywords: herbivoreplantphase linesbifurcationoverexploitationsheepgraze

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    1-170-CensusModeling-ModelingScenario
    Students who have studied models for population are likely to be familiar with the exponential and the logistic population models. The goal here is to explore the role of modeling assumptions in...

    Keywords: logistic growthexponentialpopulationU.S. Census DataassumptionGoogle SheetsUnites StatesGuatemala

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    5-011-ModelingIbuprofren-ModelingScenario
    We consider modeling of data from a clinical experiment administered as oral doses of 400 mg ibuprofen, an analgesic pain reliever. Concentrations of ibuprofen in the serum/plasma of the subjects...

    Keywords: dataAICAkaike Information Criterionabsorptionsum of square errorscompartment modelibuprofendelay

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    5-012-LipoproteinModeling-ModelingScenario
    Data from a study on the amounts of low-density-lipoprotein (LDL), form of cholesterol, in blood plasma is presented. Students build, validate, and use a compartment model of the kinetic...

    Keywords: wildlifelow-density-lipoproteintracercompartment modelcholesterolblood plasmabody tissue

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    5-030-AirshedSulphur-ModelingScenario
    Temperature inversions and low wind speeds trap air pollutants in a mountain valley for a period of time. Gaseous sulfur compounds are a significant air pollution problem. We offer a model for...

    Keywords: sulphurpollutionairshedhydrogen sulfidesulfur dioxide

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    6-029-TumorGrowth-ModelingScenario
    This modeling scenario guides a student familiar with single ordinary differential equation (ODE) models towards the development of a more complex system of two ODEs for describing the evolution of...

    Keywords: Pop_Growth Pilotlogisticcomparmenttumorsynthetic datasum of squares error

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    6-065-InternetPlatformUsers-ModelingScenario
    A model estimating the volume of users interacting through a two-sided Internet platform (allowing interaction of two types of users) will teach students how to analyze a 2-dimensional dynamical...

    Keywords: dynamicsflowconservedfixed pointscycletinternet platformdiverghenceJacobianattractingrepellingnodesstablesaddlespiral

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    NIBLSE Incubators: A community-based model for the development of bioinformatics learning resources
    Presentation on NIBLSE incubators at the 2019 Great Lakes Bioinformatics Conference

    Keywords: bioinformaticsNIBLSEBioinformatics Educationincubators

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    NIBLSE Incubators: A community-based model for the development of bioinformatics learning resources
    Presentation given at GLBIO 2019 on NIBLSE Incubators

    Keywords: bioinformaticsNIBLSEincubators

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    A Hands-on Introduction to Hidden Markov Models
    A lesson in which students will understand the basic structure of an HMM, the types of data used in ab initio gene prediction, and its consequent limitations.

    Keywords: Markov modelbioinformaticsgenomicsNIBLSEtranscriptionCourseSourceexonintronsplicing

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    Behavioral Genetics: Investigating the genes of a complex phenotype in fruit flies
    Introductory genetics laboratory published as GSA Learning Resource

    Keywords: behaviorbioinformaticsNIBLSEdrosophilagenetic basisfruit fliesmodel organism

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    Draft Version: Energy Balance Models
    This module introduces the student to the process of mathematical modeling.

    Keywords: modulemathematical modelingbenergy balanceclimate modelDIMACSResources @ DIMACSclimatein-class activityResources @ QUBES - Teaching & Referencescienceexperiment

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    Painting turtles: an introduction to species distribution modeling in R
    This module uses R software to introduce students to the process of accessing databases and building species distribution models based on occurrence records.

    Keywords: RResources @ ESA - TIEEfmnDIGspecies distributionshabitat suitabilitycooperative learningjigsaw

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