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    2017-Allali-EtAl-Mathematical Modeling of the Adaptive Immune Responses in the Early Stage of the HBV Infection
    The aim of this paper is to study the early stage of HBV infection and impact delay in the infection process on the adaptive immune response, which includes cytotoxic T-lymphocytes and antibodies.

    Keywords: logisticHBV infectionadaptive immunie responseT-lymphocytes

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    2017-Alex_Honchar-Neural Networks For Solving Differential Equations
    In this post I want to show how I applied simple feed-forward NNs to different differential equations with increasing complexity: ODEs, second order ODEs, and, finally, PDEs.

    Keywords: neural networksCybenko theoremdiffusion equationfluid dynamics

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    2009-Agnes_Rash-Brian_Winkel-Birth_and_Death_Process_Modeling_Leads_to_the_Poisson_Distribution
    In this paper there are details of development of the general birth and death process from which we can extract the Poisson process as a special case.

    Keywords: ProbabilityMeanPoisson processbirth and death processinfinite number of differential equations

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    9-001-SkinBurnModelNumericalMethods-TechniqueNarrative
    The heat equation is an important partial differential equation (PDE) which describes the distribution of heat in a given region over time. Numerical methods play an important role in solving these.

    Keywords: Maternal-Fetal interfaceheat equationConservation of Energytheat fluxEuler's forward methodcentral differenceskin burnhyperthermiathermal conductivitylayers

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    Hypoxia: A Case Study in R
    Aquatic ecosystems are home to a complex intersection of physical and biological factors and an intersection of natural and anthropogenic factors. In the Chesapeake Bay, low oxygen events have...

    Keywords: data analysisOceanographyProject EDDIE

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    1-001s-StochasticMDeathImmigration-ModelingScenario
    We develop a mathematical model of a death and immigration process using m&ms as a stochastic process with the help of probability generating functions (pgf). We start with 50 m&ms in a bag.

    Keywords: simulationdatalogisticimmigrationstochasticdeathfitting

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    3-150-ItsABlastFurnace-ModelingScenario
    This project uses the steady-state heat equation to model the temperature distribution in an industrial furnace used for metal production, for example, a blast furnace.

    Keywords: steady stateheat equationinverse problemfurnace

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    A Critical Guide to the PDB
    This Critical Guide in the Introduction to Bioinformatics series provides a brief outline of the Protein Data Bank – the PDB – the world’s primary repository of biological macromolecular structures.

    Keywords: NIBLSEGOBLETInstructorResources

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    Body Size Constraints in Xylem Feeding Insects: Allometric Relationships
    This module introduces body size constraints of xylem-feeding insects in the context of understanding allometric relationships. It is intended for an introductory biology audience.

    Keywords: allometryRatiosexponential equationslogarithmic equationsGenetics and Evolution

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    Student-led evaluation of air quality issues using the US EPA AirData website
    Presentation made by Katherine Berry et al. as part of the "Bringing Research Data to the Ecology Classroom: Opportunities, Barriers, and Next Steps” Session at the Ecological Society of...

    Keywords: Ecological Society of America

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    2002-Faia-Differential Equation Modeling as a Source of Theoretical Insight-Four Disparate Examples
    We explore differential equations involving alcoholism, social mobility, excess female mortality, and international arms competition.

    Keywords: sociologyarms racesaccumulative advantagealcoholismPeter Principlefemale mortalitypopulation pressureoccupational mobilitysocial mobilityRichardson theory of war

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    2018-Weber_Theers_Surmann_Ligges_Weihs-Sensitivity Analysis_of_Ordinary_Differential_Equation_Models
    This report will focus on the sensitivity analysis of ordinary differential equation (ODE) models since they can be used to model so-called Low Frequency Oscillations (LFOs).

    Keywords: sensitivityregressionparameter estimationsystemlow frequency oscillationsoscillations

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    2019-Stender_EtAl-Recovery_Of_Differential_Equations_From_Impulse_Response
    In this work, a recent method, which allows reconstructing differential equations from time series data, is extended for higher degrees of automation.

    Keywords: time seriesregressionresponseimpulseoscillationsignal processingsparse regressionsystem identification

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    3-064-GearTrain-ModelingScenario
    Students model an input-output mechanical system of gears with a second order, non-homogeneous, ordinary differential equation with constant coefficients. The model incorporates friction and...

    Keywords: frictiongearspur geargear traintorquegear ratioangular accelerationangular velocitymoment of inertiadouble reduction gear

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    4-060-CircuitTuner-ModelingScenario
    We present essential definitions and laws for the study of simple RLC electrical circuits and build a differential equation model using these notions. We describe how such a circuit can be used to...

    Keywords: resistanceciircuittuned mass tunerfrequencyKirchhoffvoltagegainfrequency responseamplitudes Voltage LawinductancecapacitorI am currently working in redesining an existing microbiology course. I would like to be part of ed

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    STEM OER Accessibility Framework and Guidebook
    This framework, developed by ISKME in partnership with SERC, provides a practical reference for curators and authors of STEM OER, with 23 accessibility criteria, or elements, to reference as they...

    Keywords: OEROER Evaluation

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    5Qs: An Activity to Support Students Develop Skills to Interpret Research Observations
    5Qs (five questions) is a simple pedagogy tool research mentors can use to help students think through their observations systematically, to draw supported conclusions, and to decide on next steps,...

    Keywords: researchMentorshipambiguitymodelling scientific thinkingencouraging independence

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    2015 Quantitative Biology Education Summit
    Abstract for a meeting, 2015 Quantitative Biology Education Summit.

    Keywords: meetingQUBESRCNquantitative biologyData In Inquiryworkshop

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    Central Dogma, Dictionaries, and Functions: Using Programming Concepts to Simulate Biological Processes
    Technologies like next-generation sequencing, proteomics, and high-throughput phenotyping have transformed the way we do biology. There is a continued need for scientists with computational skills...

    Keywords: computationpythonJupyter notebookFunctionscentral dogmaDictionaries

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    A Classroom Intervention to Reduce Confirmation Bias
    STEM students are often unable to recognize cognitive bias in their own disciplines, and simply describing cognitive bias to students has shown to be insufficient to improve critical thinking....

    Keywords: biasprocess of sciencemetacognitionConfirmation BiasCognitive Bias

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