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    Inquiry-based hypothesis testing using phylogenetic trees in MEGA
    A key learning objective in biology is applying bioinformatics tools to test a real-life question. These inquiry-based modules have students assemble and align data, and construct simple...
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    A Critical Guide to BLAST
    This Critical Guide in the Introduction to Bioinformatics series provides an overview of the BLAST similarity search tool, briefly examining the underlying algorithm and its rise to popularity.
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    Single Cell Insights Into Cancer Transcriptomes: A Five-Part Single-Cell RNAseq Case Study Lesson
    There is a growing need for integration of “Big Data” into undergraduate biology curricula. Transcriptomics is one venue to examine biology from an informatics perspective. RNA sequencing has...
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    COVID-19: Molecular Basis of Infection-ADAPTATION
    This case was written in Spring 2020 during the COVID-19 pandemic. It focuses on understanding the structure and interaction of the SARS-Cov-2 viral spike protein that facilitates infection in...
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    Interdisciplinary biology education: a holistic approach to an intractable problem
    Presentation on interdisciplinary biology education at the 2019 Great Lakes Bioinformatics Conference
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    Incubators: A community based model for improving the usability of bioinformatics learning resources
    Poster on Incubators, a NIBLSE and QUBES collaboration presented at Great Lakes Bioinformatics Conference - Chicago, IL

    Keywords: NIBLSEincubators

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    An Introduction to Eukaryotic Genome Analysis in Non-model Species for Undergraduates: A tutorial from the Genome Consortium for Active Teaching
    Advances in Next Generation Sequencing (NGS) technology have led to development of many research methods for analyzing genomic data. Students studying biology at the undergraduate level must hone...
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    An Introduction to the R Programming Environment
    An online module introducing students and biologists to R, published in American Phytopathological Society
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    A Critical Guide to the PDB
    This Critical Guide in the Introduction to Bioinformatics series provides a brief outline of the Protein Data Bank – the PDB – the world’s primary repository of biological macromolecular structures.
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    Java array and random number generator, hints
    Java, UTC, Fall 2017
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    Java String array demo, switch two elements in an array
    CPSC1100, UTC Fall 2017
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    Java array demo, loop over assignment and print
    CPSC1100, UTC, Fall 2017
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    Declare and intialize arrays in Java
    UTC, CPSC1100
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    Java while loop demo, investment case
    BigJava Chapter 6, UTC, CPSC1100 Fall 2017
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    Java String substring usage, initials
    CPSC1100 Fall 2017, UTC. Big Java Chapter 4.
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    Northern Processing
    Using photoshop and illustrator from tif file to make a figure
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    Aging and Circular RNAs
    A science FIT seminar presented to incoming freshmen at UNR
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    NCBI Overview
    An overview of some of the databases within NCBI and how to get FASTA sequences.
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    UniProt
    Brief description of UniProt and its databases and features
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    GSEAtheory
    Brief introduction to how gene set enrichment analysis works.
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