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    6-068-VisualizingPredator-PreyCycles
    In this modeling scenario, we propose a gentle introduction to limit cycles using nullcline analysis and a spreadsheet graphical approach via the fourth-order Runge-Kutta method. We will be...

    Keywords: nullclinespredator-preyGeometrypredatorRunge-Kuttapreylimit cycle

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    Murder by HIV? Undergraduate edition
    Bioinformatics case study focusing on phylogenetic tree interpretation, published in the National Center for Case Study Teaching in Science

    Keywords: case studyResources @ NSF - NCCSTSbioinformaticsNIBLSEHIVnucleotide sequencingphylogenetic treeviral life cyclesmutation ratesreverse transcriptase sequences

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    Exploring the Lytic and Lysogenic Life Cycles of Bacteriophages
    The goal of this lesson is to introduce students to the lytic and lysogenic cycles of T4 and lambda bacteriophages, respectively, using student-centered pedagogies. Bacteriophages are viruses that...

    Keywords: bacteriophagesLysogenic cycleLysogenyLytic cycle

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    1-078-MonodGrowthModel-ModelingScenario
    Students model growth of bacteria E. coli in a limiting nutrient environment using data from a historical study.

    Keywords: bacterianutrient cyclesgrowthMonodconsumption

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    Parasite Lifecycle Storybook: Nick the Tick
    Nick the Tick is story about parasite lifecycles suitable for use in university or K-12 settings. The story is about a newly hatched tick named Nick and his adventures as he attempts to find his...

    Keywords: parasiteslife cyclesscience illustrationStorybook

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    2017-Chávez-EtAl-Modeling and Analysis of Integrated Pest Control Strategies via Impulsive Differential Equations
    The paper is concerned with the development and numerical analysis of mathematical models used to describe complex biological systems in the framework of Integrated Pest Management (IPM).

    Keywords: bifurcationschaosimpulsive modellimit cycleshysteretic effectsperiod-doubling cascades

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    Exploring Functions for Common Phage Proteins
    This resource is designed to help students better understand the functions of common structural and enzymatic phage proteins, and to relate these functions to phage structure using electron...
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    Fish, forests, and phosphorus: How do tropical fish, rainforest canopies, and volcanic groundwater inputs affect stream phosphorus cycling?
    Rainforest stream nutrient concentrations vary with groundwater source, and different stream fish species feed on aquatic and/or terrestrial prey. Explore how phosphorus cycling changes with stream...

    Keywords: nutrient cyclesBiogeochemistrykeystone speciesfood webFunctional Diversity

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    Parasites -- They're what's for dinner: Investigating the role of parasites in aquatic food webs
    Use a well-resolved food web database from a freshwater wetland ecosystem in central California to explore how parasites influence community properties and learn how food webs are constructed and...

    Keywords: Resources @ ESA - TIEEparasitismDisease ecologyfmnDIGfood web ecologywetland communitiescomplex life cyclesnetwork modelingintroductory ecology

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    Evaluating Local Adaptation and Conservation with Life Tables
    This module contains a sequence of activities designed for an undergraduate ecology lesson on stage-structured population models or life tables that use published data. Two versions are provided:...

    Keywords: ecologypopulation modelmatrix modelsclimate changelife cyclessensitivity analysispopulation ecologylife tablestage-structured modelsnet reproductive rateconservation planning

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    Integrating Community Ecology Into the Study of Parasites: Exploring the Effect of Host Behavior on Parasite Transmission Rates
    Organismal life cycles are often presented as a set of facts to memorize in undergraduate biology courses. This approach is cognitively demanding for students and fails to convey how central life...

    Keywords: statisticsspecies interactionsQuantitative reasoninggraphsCommunity EcologyParasitologyfood webs

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    Integrating the modeling of biogeochemical cycles and energy flow
    This in-class activity challenges students to create and then integrate models of how carbon, nitrogen, water and energy all move within an ecosystem. Using 15 provided standard pools, they work...

    Keywords: modelingecologyintegration4DEE FrameworkBiogeochemical cycles

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    A Kinesthetic Modeling Activity to Teach PCR Fundamentals
    Most molecular biology and biological sciences students understand that the polymerase chain reaction (PCR) is used to amplify DNA. However, we have found that some students experience conceptual...

    Keywords: PCR

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    Climate Drivers of Phenology (Project EDDIE)
    This activity explores the question: which species will be most affected by temperature changes, and how will changes in the phenology of one species affect its interaction with others as the...
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    Climate Drivers of Phenology (Project EDDIE) - adaptation focused on Part A and B
    This adaptation explores the questions: Based on observations of bumblebee phenology, are bumblebees in the western United States behaving differently from 2011 to 2019? What climate variables may...
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    Climate Drivers of Phenology Across Scales (adapted during Project EDDIE FMN)
    This activity explores the question: how is bumblebee phenology affected by climate, and are patterns in the phenology of an organism better explained at smaller scales?
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    Climate Drivers of Phenology (Project EDDIE)
    This activity explores the question: which species will be most affected by temperature changes, and how will changes in the phenology of one species affect its interaction with others as the...
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    A Short Bone Biomechanics Primer: Background for a Lesson on Bone Viscoelasticity
    The skeletal system is the first of the body systems that we discuss in-depth in our Physiology & Anatomy courses (PNB 2264/2265 and PNB 2274/2275) in the Department of Physiology and...

    Keywords: structure-functionbiomechanicsAnisotropyViscoelasticity

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    2017-Guy-Bart_Stan-Modelling in Biology
    This is a very rich set of notes, rich in examples and ideas for modeling. In almost all cases after a model is introduced in real context there is attention to stability analysis.

    Keywords: spring massbifurcationmass actionlimit cycles

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    Exploring Microbial Diversity: An Interactive In-Class Assignment for Biology and Microbiology Courses
    This interactive assignment engages students in a hands-on exploration of microbial diversity and the importance of microbes in ecosystems. Designed for General Biology II and Introduction to...

    Keywords: Microbiology EducationMicrobial DiversitymicrobiologyEcological Society of Americaecology educationresearch-based classroom instruction4DEE Framework

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