You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Understanding Gene Prediction Programs
    Introduces students to the key biological concepts underlying computational gene prediction. Outcomes include ability to analyze and evaluate output of gene prediction programs, and reflect on...

    Keywords: Genome annotationSEA-PHAGESgene predictiongenemarkcoding potentialcodon biassix frame translation

    1139

    views

    1281

    downloads

    2

    comments

    0

    adaptations

    Scientist Spotlights: Integrating Themes of Diversity and Inclusion with Course Content
    The Scientist Spotlights Initiative empowers middle/high school, college, and university science educators to implement inclusive curricula that help ALL students see themselves in science.

    Keywords: communitydiversityinclusivity

    1073

    views

    388

    downloads

    6

    comments

    0

    adaptations

    NEON Data in the Classroom: Quantifying Spatial Patterns
    Students build on fundamental concepts of spatial patterns and combine this knowledge with the open-data from the National Ecological Observatory Network to quantify spatial autocorrelation and...

    Keywords: RR Markdownlandscape ecologygroup-neon2018spatial statisticsfractalsrasters

    2010

    views

    853

    downloads

    0

    comments

    0

    adaptations

    Comparing Primary and Secondary Forest in a Preserve in Plano Texas: A Forest Ecology Course-based Undergraduate Research Experience (CURE) for Non-Majors and Lower-Level Majors
    An activity that can be conducted as an online or field exercise in which students develop and test their hypotheses about how forest stand characteristics differ between two forest types.

    Keywords: forest ecologyecologycourse-based undergraduate research experienceUsing Excel

    1945

    views

    546

    downloads

    4

    comments

    0

    adaptations

    Microbiomes forAll: The Research Experiences in Microbiomes Network
    Poster on REMNet presented at the 2020 BIOME Institute: Cultivating Scientific Curiosity

    Keywords: undergraduate researchcourse-based undergraduate research experiencemicrobiomesmicrobiomeCUREREMNet

    1085

    views

    226

    downloads

    0

    comments

    0

    adaptations

    Actually, Data Science CAN Be Accessible: Barriers to inclusion of people with disabilities in the data science workforce pipeline and ideas for lowering them
    Will draw on personal experience as a student and professional with a severe visual impairment and knowledge gained from colleagues and friends during ongoing efforts in the area of accessible...

    Keywords: Video

    2934

    views

    416

    downloads

    0

    comments

    0

    adaptations

    Piwi Matters
    This case focuses on understanding structure and function relationships in Piwi, a protein that is critical for germline stem cell function and development of eggs in the fruit fly ovary.

    Keywords: Stem cellsmolecular visualization and analysis3D protein structure /function analysisPiwiPDBMolecular Case Study

    1325

    views

    565

    downloads

    0

    comments

    1

    adaptations

    Digital Atlas of Ancient Life | Exploring the Diversity and History of Fossil Life
    The Digital Atlas project include field guides to fossils (including a mobile app), an online paleontology textbook, and a collection of over 500 virtual 3D models of fossil specimens.

    Keywords: Evolutionbiologyidigbiopaleontologytaxonomynatural history collectionsgeologySPNHC2020

    1250

    views

    299

    downloads

    0

    comments

    0

    adaptations

    Biodiversity research using digitized, internet-based natural history collections
    Collections based research is a critical tool for organismal biology and biodiversity research. Yet natural history collections have a complicated past. This multi-class module examines the...

    Keywords: natural historycollectionsdigital resourcesOERBiodiversitynatural history museumsdigital collectionsbirdsBiodiversity Collections Network (BCoN)BLUE

    2129

    views

    1651

    downloads

    0

    comments

    0

    adaptations

    Mosquito Vector Ecology of the East Coast using NEON
    This data module examines the relationship between mosquito vector ecology and climate across the east coast of the United States. The module is designed to merge core concepts in ecology with...
    1458

    views

    3677

    downloads

    0

    comments

    0

    adaptations

    Ferns are Everywhere
    Using spatial fern population data in hypothesis testing

    Keywords: hypothesis testingNumbers Countspatial distribution

    1160

    views

    244

    downloads

    0

    comments

    0

    adaptations

    Using Synthetic Biology to Teach Data Science
    Poster and supplemental materials on using synthetic biology to introduce students to meaningful data mining, analysis, and application to engineering novel biological constructs.
    1018

    views

    764

    downloads

    0

    comments

    0

    adaptations

    Build-a-Phage Lab Manual
    This is a lab manual for phage genome synthesis that includes both Building Block synthesis and Semi-synthetic assembly.
    1349

    views

    655

    downloads

    0

    comments

    0

    adaptations

    A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!
    This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.

    Keywords: data sciencebioinformaticsnext generation sequencingquality controlFASTQgenomicsprogrammingNIBLSElinuxmicrobiomeIllumina sequencingcommand lineFASTQEFASTPNGS analysisterminalMacemojiPhred scoreTrimmingshort read

    2602

    views

    2306

    downloads

    1

    comments

    0

    adaptations

    Expanding Undergraduate Participation in Computational Biology: Resources and Lessons Learned from a Hands-on Workshop
    Presentation on computational biology in undergraduate education at the 2019 Great Lakes Bioinformatics Conference

    Keywords: undergraduate educationcomputational biologybioinformatics

    1328

    views

    252

    downloads

    0

    comments

    0

    adaptations

    The nose knows: How tri-trophic interactions and natural history shape bird foraging behavior. Introduction to data visualization.
    Students investigate the role of olfaction and infochemicals on bird foraging behavior.. In this module students learn to analyze and present graphic data in ways that simplify interpretation.

    Keywords: Resources @ ESA - TIEEforagingdata visualizationCommunity Ecologyfmnbehavioral ecologyDIGtrophic cascadesAntarctic foodd webs

    1318

    views

    514

    downloads

    0

    comments

    0

    adaptations

    The Polar Bear of the Salt Marsh? Warming Tolerance Limits of Local Species
    National Center for Case Study Teaching in Science- In the adaptation exercise, students explore connections between saltmarsh sparrow declines and declining populations of local species that live...

    Keywords: Coastal wetlandsConnecticutmanagementnortheastsea-level risesalt marsh

    1332

    views

    1407

    downloads

    0

    comments

    0

    adaptations

    Ancient Insects
    Create a gallery of fossil organisms and identify distinctive body parts (wings, suckers, modified appendages) from the collection. Analyze and interpret these features to predict what type of...

    Keywords: Evolutionpaleontologynatural history collections#NGSS

    1504

    views

    785

    downloads

    0

    comments

    0

    adaptations

    Students of Color Identify Ways Enivronmental Faculty Can Advance Racial/Ethnic Diversity in Undergraduate Programs
    This grounded theory study documents the experiences of students of color in undergraduate environmental degree programs. Its results can inform faculty, staff, and administrators about how to...
    1369

    views

    111

    downloads

    0

    comments

    0

    adaptations

    Summary of the National Academies Report on Data Science for Undergraduates
    Under the auspices of the National Academies, a Committee developed a consensus report regarding means to enhance undergraduate programs in the emerging discipline of data science.
    1395

    views

    410

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search