You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    1-139-PlantsVsHerbivores-ModeliongScenario
    In this activity, students will apply a variety of techniques for analyzing nonlinear systems (e.g., nullclines, linearization, and technologies for drawing phase portraits) to study...

    Keywords: ecologynullclinesherbivoreplant-herbivore interactionsplantlinearization

    264

    views

    243

    downloads

    0

    comments

    0

    adaptations

    ENCOUR - Ethics Network for Course-based Opportunities in Undergraduate Research: Phase II (RCN-UBE Introduction)
    The Ethics Network for Course-based Opportunities in Undergraduate Research (ENCOUR) seeks to explore effective ways to integrate responsible & ethical conduct of research (RECR) education into...

    Keywords: RCN-UBE Introduction

    489

    views

    62

    downloads

    0

    comments

    0

    adaptations

    Literature Review: Inclusive Calculus for Life Sciences
    We believe that a biology-relevant calculus experience (biocalculus) can help overcome many of these issues in calculus. While challenging to build the capacity for teaching courses, students in...

    Keywords: calculusbiocalculusidentityInclusive teachingcalculus epistemology

    125

    views

    32

    downloads

    0

    comments

    0

    adaptations

    2020-Teaching Module-Applying Separation Of Variables
    This is one of several Teaching Modules prepare by the Principal Investigates of SIMIODE’s National Science Foundation grant and offered in 2020. The material offered is a complete narrative of how...

    Keywords: modulesEbolaseparation of variablesTeaching ModulesSeparation

    230

    views

    433

    downloads

    0

    comments

    0

    adaptations

    2004-Ledzewicz-Schattler-Application of Control Theory in Modelling Cancer Chemotherapy
    In this paper we discuss how to incorporate more realistic medical aspects of chemotherapy which hitherto have been neglected in the models.

    Keywords: optimal controldrug resistancepharmacokineticspharmacodynamicschemotherapy

    117

    views

    39

    downloads

    0

    comments

    0

    adaptations

    2015-Heiko_Enderling-Integrating experimental data to calibrate quantitative cancer models
    For quantitative cancer models to be meaningful and interpretable the number of unknown parameters must be kept minimal. We focus on a tumor hierarchy of cancer stem and progenitor non-stem cancer...

    Keywords: cancertumorfittingagent-based

    124

    views

    83

    downloads

    0

    comments

    0

    adaptations

    2012-Ogunrinde-Sunday-On some models based on second order differential equation
    This paper presents some models based on second order differential equations. Such models include interaction between different kinds of species in an environment and pricing policy for optimum...

    Keywords: species interactionpricing policyoptimal inventory

    137

    views

    42

    downloads

    0

    comments

    0

    adaptations

    2009-Peter-Howard-Modeling With ODE
    This is a set of class notes rich in examples and ideas for modeling. There is some MatLab code in support of some of the activities.

    Keywords: ratescompetitionpopulationepidemicpendulumcarbon datingreaction chemistrymechanicsplanetary motiondrag racingHamilton’s methodvariational method

    151

    views

    55

    downloads

    0

    comments

    0

    adaptations

    2007-Hui_Luo-Population Modeling by Differential Equations
    A general model for the population of Tibetan antelope is constructed. The present model shows that the given data is reasonably logistic.

    Keywords: population dynamicsextinctionlogisticTibetan antelope

    138

    views

    35

    downloads

    0

    comments

    0

    adaptations

    2006-Han-EtAl-Ordinary differential equation models for ethanol pharmacokinetic based on anatomy and physiology
    Physiologically-based pharmacokinetic (PBPK) models have been used to describe the distribution and elimination characteristics of intravenous ethanol administration.

    Keywords: liverwortsintraveneouspharmacokineticsethanolethanol infustionpharmacodynamictissue model

    113

    views

    36

    downloads

    0

    comments

    0

    adaptations

    1969-Israelsson-Johnsson-Phase-shift in Geotropic Oscillations a Theoretical and Experimental Study
    The paper studies geotropical induced phase-shifts in circumnutations (turning) of Helianthus annus hypocotlys.

    Keywords: plantoscillationdelaycircumnutationturning

    146

    views

    37

    downloads

    0

    comments

    0

    adaptations

    1994-Brian_Winkel-Ant_Tunnels_and_Calculus
    A simple mathematical model describing the time it takes for an ant to construct a linear tunnel of length x is produced from five intuitively acceptable assumptions.

    Keywords: differential equationsdifference equationfirst orderderivative definitionant tunnel

    153

    views

    64

    downloads

    0

    comments

    0

    adaptations

    1-007-AntTunnelBuilding-ModelingScenario
    We pose the prospect of modeling just how long an ant takes to build a tunnel. With a bit of guidance students produce a model for the time it takes to build a tunnel of length x into the side of a...

    Keywords: Spanishhormigatúnelanttunnel

    859

    views

    905

    downloads

    0

    comments

    0

    adaptations

    1-034-T-FishMixing-ModelingScenario
    This activity gives students a chance to build the underlying differential equation and/or difference equation for a mixing problem using tangible objects (fish) and a student-designed restocking...

    Keywords: simulationfishFishingmixingrestocking

    502

    views

    342

    downloads

    0

    comments

    0

    adaptations

    1-021-FeralCatControl-ModelingScenario
    Students act as professional mathematical consultants and write a report analyzing the client's problem. The client company is a fictional organization which advocates for the use of...

    Keywords: population growthcontrolferal catspopulation controlneutertrap-killtrap-neuter-return

    313

    views

    248

    downloads

    0

    comments

    0

    adaptations

    1-130-AspirinAbsorption-ModelingScenario
    We model the amount of aspirin absorbed by the human body at a constant rate. This is a ``zero-order reaction'' in the language of pharmacokinetics -- the study of how drugs move in the body.

    Keywords: pharmacokineticsdrugaspirin

    219

    views

    156

    downloads

    0

    comments

    0

    adaptations

    5-022-ColdPill-ModelingScenario
    A model for the flow of a cold pill drug through the gastrointestinal compartment to the bloodstream compartment of a human subject is proposed. Students solve the system of differential equation...

    Keywords: ratesmedicinedrug discoverycompartmentcold pillgastrointestinalbloodstream

    268

    views

    120

    downloads

    0

    comments

    0

    adaptations

    A Critical Guide to Unix
    This Critical Guide in the Introduction to Bioinformatics series briefly introduces the Unix Operating System, and provides a subset of some of the most helpful and commonly used commands....

    Keywords: NIBLSEUNIXbasic UNIX commandsGOBLETInstructorResources

    898

    views

    240

    downloads

    0

    comments

    0

    adaptations

    Bioinformatics: Food Detective – a Practical Guide
    This Practical Guide in the Bringing Bioinformatics into the Classroom series introduces the idea of computers as tools to help understand aspects of biology.
    761

    views

    139

    downloads

    0

    comments

    0

    adaptations

    Making toast: Using analogies to explore concepts in bioinformatics
    Module using analogies to introduce students to genomics

    Keywords: bioinformaticsgenomicsworkflowNIBLSECourseSourceanalogiesbioinformatics workflows

    1192

    views

    271

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search