You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Pain Medication Treatment Modeling Project
    This classroom modeling project applies mathematical techniques to solve a problem related to drug dosage patterns. Suitable for high school or undergraduate students. Prerequisite: Calculus I.

    Keywords: Mathematical Biologycalculusexponential decayrecursionabsorptionelimination

    1780

    views

    485

    downloads

    0

    comments

    0

    adaptations

    An active-learning lesson that targets student understanding of population growth in ecology
    Effective teaching and learning of population ecology requires integration of quantitative literacy skills. To facilitate student learning in population ecology and provide students with the...

    Keywords: population growthexponential growthlogistic growthpopulation ecologygrowth rateDensityAbundancecarrying capacitylinear growth

    4859

    views

    960

    downloads

    1

    comments

    0

    adaptations

    CURE-all: Large Scale Implementation of Authentic DNA Barcoding Research into First-Year Biology Curriculum
    Growing calls in science education reform have emphasized wide-scale engagement of first-year undergraduate students in authentic research experiences; however, large course enrollments, inadequate...

    Keywords: phylogeneticsbioinformaticsBiodiversityprocess of sciencetaxonomyPCRDNADNA sequencegel electrophoresis

    5906

    views

    3837

    downloads

    0

    comments

    0

    adaptations

    Understanding Host-Pathogen Interactions With the Use of Galleria mellonella
    The Galleria mellonella; the larvae of the Greater Wax Moth, is a safe and effective means to study host-pathogen interactions in the undergraduate setting. The use of animal models in the teaching...

    Keywords: innate immunitybacterial pathogenesisHost-pathogen interactionsGalleria mellonellaVirulence

    1527

    views

    293

    downloads

    0

    comments

    0

    adaptations

    A Modeling Exercise in Sexual Selection using a Student-Created Bird Species
    Evolution-centered lessons at the undergraduate level can often be jargon-heavy, propagate misconceptions if taught ineffectively, and be uninteresting to students who may not see the relevancy of...

    Keywords: Evolutionfitnesssexual selectionNatural Selectionintersexual selectionmate choice

    2353

    views

    447

    downloads

    0

    comments

    0

    adaptations

    COVID-19 Spread NetLogo ABM
    This project aimed to utilize agent-based modeling in NetLogo to create a simulation of COVID-19 spread in a traditional college classroom. The model allows for an evaluation of different...

    Keywords: classroomNetLogoagent-based modelingdisease prevention

    377

    views

    94

    downloads

    0

    comments

    0

    adaptations

    2012-Gilbert_Koch-Modeling of Pharmacokinetic and Pharmacodynamics of Cancer and Arthritis
    In this work we develop preclinical PKPD models based on fundamental biological and pharmacological principles. Equipped with a PKPD model, different dosing schedules could be simulated.

    Keywords: cancerpharmacodynamicsPKPD modelarthritisPharmacokineticanticancer

    114

    views

    37

    downloads

    0

    comments

    0

    adaptations

    2011-Nguyen-Shi-Modeling the absorption circulation and metabolism of tirapazamine
    This apparently is a student project and it develops the kinetic model, uses Matlab for numerical solution, analytic solution and numerical solution.

    Keywords: absorptionMichaelis-MentenMetabolismdrug metabolismcirculation

    122

    views

    39

    downloads

    0

    comments

    0

    adaptations

    2005-Albert_Tarantola-Inverse Problem Theory and Methods for Model Parameter Estimation
    This is a bible of approaches to support parameter estimation approaches in inverse problems. Theory and algorithms are offers with examples.

    Keywords: Algorithminverse probleminverse

    194

    views

    90

    downloads

    0

    comments

    0

    adaptations

    Using the Cell Engineer/Detective Approach to Explore Cell Structure and Function
    As instructors of introductory biology courses for majors and non-majors, we have struggled with teaching the concept of cell structure and function in an engaging way.  However, this is a...

    Keywords: cell functionCell StructureCellular diversityDynamic cellular functionOrganelle function

    3133

    views

    1260

    downloads

    0

    comments

    0

    adaptations

    Assessing Urban Biodiversity With the eBird Citizen Science Project: A Course-Based Undergraduate Research Experience (CURE) Module
    The eBird citizen science module takes advantage of technology tools and online resources developed by the Cornell Laboratory of Ornithology (http://ebird.org) to achieve several learning...

    Keywords: datacitizen sciencecommunityBiodiversitySpecieshypothesishabitat

    3112

    views

    889

    downloads

    0

    comments

    0

    adaptations

    2017-Biswasa-EtAl-Mathematical Modeling Applied to Sustainable Management of Marine Resources
    We study a nonlinear mathematical model of fishery management to understand dynamics of a fishery resource system in an aquatic environment that consists of two zones; one free fishing zone and...

    Keywords: natural resourcesmarine resourcesfishery model

    122

    views

    70

    downloads

    0

    comments

    0

    adaptations

    2015-Zhang-EtAl-On the Selection of ODE Models with Application to Predator-Prey Dynamical Models
    We propose a computationally inexpensive approach that employs statistical estimation of the full model, followed by a combination of a least squares approximation (LSA) and the adaptive Lasso.

    Keywords: least-squares approximationSpline modelingMonte Carlo simulationsvariable selectionadaptive LASSO

    139

    views

    59

    downloads

    0

    comments

    0

    adaptations

    2012-Rusinko-Swan-Agent-Based Fabric Modeling Using Differential Equations
    We use an agent-based modeling software, NetLogo, to simulate fabric drape by applying a modified mass spring system.

    Keywords: NetLogospring massagent-baseddrapingyarnfabric

    126

    views

    42

    downloads

    0

    comments

    0

    adaptations

    2007-Choisy-Guégan-Rohani-Mathematical Modeling of Infectious Diseases Dynamics
    After presenting general notions of mathematical modeling (Section 22.2) and the nature of epidemiological data available to the modeler (Section 22.3), we detail the very basic SIR epidemiological...

    Keywords: stochasticSIR modeldeterministicincubationinfectives

    95

    views

    39

    downloads

    0

    comments

    0

    adaptations

    2006-Ousmane_Mousa_Tessa-Mathematical model for control of measles by vaccination
    In this article, we use a compartmental mathematical model of the dynamics of measles spread within a population with variable size to provide this framework.

    Keywords: vaccinationcompartmentherd immunitymeaslesoptimal strategy

    119

    views

    41

    downloads

    0

    comments

    0

    adaptations

    1-125-DiceyPopulation-ModelingScenario
    We offer students an opportunity to generate data for their team on a death and immigration model using 12 and 20 sided dice and then pass on the data to another student team for analysis with a...

    Keywords: simulationimmigrationdeathdice

    173

    views

    118

    downloads

    0

    comments

    0

    adaptations

    2004-Mark_McCartney-Using_second-order_ordinary_differential_equations_to_model_traffic_flow
    A simple mathematical model for how vehicles follow each other along a stretch of road is presented. The resulting linear second-order differential equation with constant coefficients is...

    Keywords: differential equationstraffic flowvehicle followsecond order

    139

    views

    61

    downloads

    0

    comments

    0

    adaptations

    5-077-MandMAttritionWarfare-ModelingScenario
    Students model attrition between two opposing forces using M&M candies and discover a system of linear differential equations of order one, often called the Lanchester equations.

    Keywords: attritionLanchester modelpredator-predatorN-square Law

    197

    views

    168

    downloads

    0

    comments

    0

    adaptations

    6-067-LotkaVolterra-ModelingScenario
    This modeling scenario guides students through the process of fitting the Lotka-Volterra model of two differential equations to a real time series observational data. Students use the capabilities...

    Keywords: time seriesdatacompetitionLotka-Volterramodel fittingpredictiongauseRexperimental

    362

    views

    101

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search