You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Working with spreadsheet-style data in Python with pandas and seaborn
    This 4-hour participatory live-coding workshop takes learners through the basics of programming in Python via the Jupyter Lab interface and culminates with exploration and visualization of...

    Keywords: datapythonopenSpreadsheetbicylepandasseabornmatplotlib

    1580

    views

    1616

    downloads

    0

    comments

    0

    adaptations

    3D breast cancer tissue reconstruction
    This module allows students to follow a researcher as she discovers new features of breast cancer tissue architecture, using 3D reconstructions of histological specimens.

    Keywords: graphingdata visualizationbreast cancerDCIShistogramscentroidsums of squares

    2038

    views

    1545

    downloads

    0

    comments

    0

    adaptations

    How to Find a Gene: Retrieving Information From Gene Databases
    A strong understanding of distinct gene components and the ability to retrieve relevant information from gene databases are necessary to answer a diverse set of biological questions. However, often...

    Keywords: NCBItranscriptiontranslationGene StructureGene databasesEnsembl

    1145

    views

    308

    downloads

    0

    comments

    0

    adaptations

    Exploring the Complexities of Photosynthesis Through a Comic Strip
    Photosynthesis is a conceptually challenging topic. The small scale at which photosynthesis takes place makes it difficult for students to visualize what is occurring, and students are often...

    Keywords: photosynthesislight-dependent reactionsCalvin cyclechloroplast

    3416

    views

    728

    downloads

    0

    comments

    0

    adaptations

    A simple way for students to visualize cellular respiration: adapting the board game MousetrapTM to model complexity
    Lecture-based introductory biology courses are typically content-heavy as instructors strive to provide students with foundational knowledge in a broad range of topics.  One topic...

    Keywords: ATPGlycolysisCellular RespirationElectron Transport ChainKrebs Cycle

    4151

    views

    635

    downloads

    0

    comments

    0

    adaptations

    A CURE for Salmonella: A Laboratory Course in Pathogen Microbiology and Genomics
    Rapid advances in genomics and bioinformatics, the vast amount of data generated by next-generation sequencing, and the penetration of the ‘-omics’ into many areas of biology have created a need...

    Keywords: epidemiologyresearchbioinformaticsgenomicspublic healthAntibiotic Resistant BacteriaSalmonellaDNA sequencingpathogenic bacteria

    5472

    views

    1107

    downloads

    0

    comments

    0

    adaptations

    Phylogeny of Land Plants
    In this lab, students review the characteristics of the major land plant lineages. Then they perform phylogenetic analyses based on morphological characters.

    Keywords: morphologyphylogenylaboratoryplantsmolecular analysis

    1186

    views

    926

    downloads

    0

    comments

    0

    adaptations

    ICABL: An Inclusive Community for the Assessment of Biochemistry and Molecular Biology (BMB) Learning (RCN-UBE Introduction)
    ICABL is an inclusive and collaborative community that supports the professional development of biochemistry and molecular biology scientist-educators committed to the enhancement of student...

    Keywords: RCN-UBE Introduction

    401

    views

    66

    downloads

    0

    comments

    0

    adaptations

    2012-Brian_Ingalls-Mathematical Modelling in Systems Biology An Introduction
    This is a comprehensive text with much biology background to motivate the mathematical modeling, exercises and answers, and many rich examples.

    Keywords: spatialsensitivity analysisgene regulatory networksstochasticbifurcationmetabolic networkselectrophysiologytransductionrate lawsbiochemical reactions

    341

    views

    68

    downloads

    0

    comments

    0

    adaptations

    Studying phylogeny by producing phylogenetic trees of primates using morphological and molecular characteristics.
    An assignment constructing phylogenetic trees using shared, derived morphological traits and molecular differences among 18 primate species and two outlier species has been developed. Skull and...
    619

    views

    129

    downloads

    0

    comments

    0

    adaptations

    Using computational molecular modeling software to demonstrate how DNA mutations cause phenotypes
    This lesson is a five-week series of laboratory activities designed to help students transition from applying lower order thinking skills to the central dogma to applying higher-order thinking skills.

    Keywords: bioinformaticsNIBLSEProtein StructureDNAmolecular modelinggenotypephenotypeCourseSourcecomputational modelingcentral dogmaplant leaf structure

    1252

    views

    283

    downloads

    0

    comments

    0

    adaptations

    A CURE-based approach to teaching genomics using mitochondrial genomes
    There is an abundance (currently over 1016 DNA bases) of publicly available genetic sequence data and a dearth of trained genomicists to process and interpret it, necessitating more trained...

    Keywords: proteinsMitochondrial GenomesNuclear GenomesrRNAtRNA

    1629

    views

    255

    downloads

    0

    comments

    0

    adaptations

    2015-The European Bioinformatics Institute-BioModels Database
    BioModels Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references.

    Keywords: computational biologyBioModels Databasebio databaselife science experiments

    85

    views

    56

    downloads

    0

    comments

    0

    adaptations

    "What's on your plate?" with Adam Cornish, PhD
    This talk delves into “Modern Agriculture: What’s on Your Plate?” with Dr. Adam Cornish. Adam is a program analyst in the Office of Agricultural Policy at the State Department, and received his...

    Keywords: agriculturePublic PolicyGMOs

    534

    views

    87

    downloads

    0

    comments

    0

    adaptations

    SKILLS DEVELOPMENT - Toxicology MSDT
    On this website you can find 6 learning modules on various topics in toxicology. These are self-paced student-centered online learning modules. You will receive a certificate of completion at the...

    Keywords: pathophysiologyregulatory toxicologyprinciples of toxicologybiochemistry and molecular geneticsprinciples of genetic toxicologyapplied systems toxicology

    583

    views

    135

    downloads

    0

    comments

    0

    adaptations

    Using Bioinformatics to Understand Genetic Diseases: A Practical Guide
    This Practical Guide outlines a number of basic bioinformatics approaches that can be used to understand the molecular basis of genetic diseases.
    801

    views

    172

    downloads

    0

    comments

    0

    adaptations

    Does explicitly teaching leadership skills increase student persistence in STEM fields?
    Poster on leadership skills presented at the 2019 BioQUEST & QUBES Summer Workshop
    838

    views

    118

    downloads

    0

    comments

    0

    adaptations

    The struggle is valid: Increasing student science identity and quantitative skills
    This poster outlines the approach to our research on science identity and quantitative skills. Our approach includes an established educational researcher to assure that our design, approach,...

    Keywords: data visualizationquantitative skillsSelf-Efficacyinclusive classroomsdiversity equity and inclusionscience identityBIOME 2022survey instruments

    714

    views

    343

    downloads

    1

    comments

    0

    adaptations

    Working with Datasets in R swirl
    The goal of this lesson is to learn how to import datasets into R, understand variable types, make adjustments to variables, perform basic calculations, and begin data visualization. The exercise...

    Keywords: graphingRStudioclimate change datatidyverseWorking with datasets

    1454

    views

    850

    downloads

    0

    comments

    0

    adaptations

    Introduction to Genome Browser: What is a Gene?
    In this module, we will use a web-based visualization tool called a Genome Browser to explore the structure of a eukaryotic gene, and obtain a basic understanding of how this information is...
    638

    views

    149

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search