You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    2014-Chivers-EtAl-Predator-prey systems depend on a prey refuge
    We present an agent-based model which does not require the factors or constraints of previous models to reproduce all six patterns in persistent populations.

    Keywords: Individual & Agent Based Modelingpredator-preythink-pair-shareslynxrefugeprey switchingMustela-Clethrionomys systempatter oriented

    121

    views

    39

    downloads

    0

    comments

    0

    adaptations

    2018-Van_Kinh Nguyen-Esteban_Hernandez-Vargas-Parameter estimation in mathematical models of viral infections using R
    Mathematical modeling has played a central role to understand mechanisms in different viral infectious diseases. In this approach, biological-based hypotheses are expressed via mathematical...

    Keywords: simulationdiseasevirusviral infection

    204

    views

    54

    downloads

    0

    comments

    0

    adaptations

    2018-Winkle-Igoshin-Bennett-Josic-Ott-Modeling_Mechanical_Interactions_in_Growing_Populations_of_Rod-Shaped_Bacteria
    Here, we present an agent-based model that allows growing cells to detect and respond to mechanical interactions.

    Keywords: bacteriaagent-basedpopulationbrod-shapedcellular growth

    127

    views

    49

    downloads

    0

    comments

    0

    adaptations

    Simple, Accessible River-Based Field Investigation of Riverine Microplastics
    Scientists have discovered that microplastic pollution is ubiquitous in the environment, but the small size of these microscopic pollutants prohibits most people from recognizing their prevalence....

    Keywords: environmental sciencemicroplastic pollutionurban waterswasteenvironmental studiesfield-based learningfreshwater ecologywater qualityRiversSingle-use plasticfreshwater sciencewater ecologyField ExperiencesRiver Ecologyfield workThe Scientific MethodRiver Field Studies Networkfield courses

    672

    views

    449

    downloads

    0

    comments

    0

    adaptations

    CourseSource 2.0: Finding high quality field-tested OERs, publishing evidence-based teaching activities, and promoting community collaborations.
    Workshop materials related to the CourseSource platform. Presented at the the 2021 BIOME Institute.

    Keywords: undergraduate biology educationCourseSourceopen educational resourceevidence-based teaching2021 BIOME

    800

    views

    498

    downloads

    0

    comments

    0

    adaptations

    Failing (in order) to succeed: Exploring how students cope with science failures in research-based courses
    Slides and related materials from the presentation given by Dr. Lisa Corwin as a part of the 2020 BIOME Institute.

    Keywords: researchresearch-based classroom instructionFailureresearch failure

    1954

    views

    294

    downloads

    0

    comments

    0

    adaptations

    Animal Behaviour Case Study Lessons in Communication, Migration, and Parental Care Using the Jigsaw Approach
    Animal behaviour courses integrate concepts across biological disciplines and are particularly well suited for collaborative, student-focused teaching...

    Keywords: case studycommunicationprimary literatureanimal behaviorjigsawParental CaremigrationAnimal BehaviourProximate mechanisms

    5472

    views

    688

    downloads

    0

    comments

    0

    adaptations

    Problem-Based Learning for Physiology: Synthesizing the Cardiovascular System, Respiration, Macronutrient Metabolism, and Renal Function
    Problem Based Learning (PBL) is a valuable tool for helping students overcome reliance on memorization by scaffolding opportunities for them to practice the competency of...

    Keywords: MetabolismObesityblood pressurecardiac functioncardiovascularmetabolic syndromerenalRespirationrespiratory system

    4145

    views

    688

    downloads

    0

    comments

    0

    adaptations

    Teaching RNAseq at Undergraduate Institutions: A tutorial and R package from the Genome Consortium for Active Teaching
    Next-generation sequencing is radically changing the study of biology, but there are currently few resources aimed at teaching the required laboratory and data-analysis skills to undergraduate...

    Keywords: statisticsbioinformaticsRNAseqgene expressioncomputer programming

    3343

    views

    557

    downloads

    0

    comments

    0

    adaptations

    2018-Akman-EtAl-Parameter Estimation in Ordinary Differential Equations Modeling via Particle Swarm Optimization
    We demonstrate Particle Swarm Optimization efficacy by showing that it outstrips evolutionary computing methods previously used to analyze an epidemic model.

    Keywords: epidemicParticle Swarm Optimizationoptimize parameters

    138

    views

    74

    downloads

    0

    comments

    0

    adaptations

    2015-Doust-Saraj-The logistic modeling population having harvesting factor
    The present paper deals with the logistic equation having harvesting factor, which is studied in two cases constant and non-constant.

    Keywords: logisticharvestharvesting factor

    113

    views

    70

    downloads

    0

    comments

    0

    adaptations

    SUSTAINABILITY METRICS AND INDICES
    Sustainability metrics and indices are measures of sustainability, and attempt to quantify beyond the general concept. Though there are disagreements among those from different disciplines (and...

    Keywords: climate changeSustainability Literacy

    408

    views

    201

    downloads

    0

    comments

    0

    adaptations

    UDL Working Group- BIOME 2022 - Lightning Talk
    UDL Working Group from BIOME 2022's Lightning talk. They discuss what they did over the course of the semester.

    Keywords: working groupBIOME 2022

    573

    views

    130

    downloads

    0

    comments

    0

    adaptations

    1-066-USCensusModeling-ModelingScenario
    The United States Census, conducted every 10 years, gives data on the United States population, that can be modeled with the exponential, logistic, or Gompertz functions.

    Keywords: datalogisticpopulationGompertzcensusgoodness of fit

    202

    views

    144

    downloads

    0

    comments

    0

    adaptations

    Facilitating the implementation and adaptation of data-centric teaching resources by closing gaps in the Open Education Resource (OER) lifecycle
    Presentation on data-centric open educational resources given at the 2019 UBER-GRC

    Keywords: DIGdata-centric teaching

    1326

    views

    299

    downloads

    0

    comments

    0

    adaptations

    Introductory Science and Mathematics Education for 21st-Century Biologists
    A unified introductory science curriculum that fully incorporates mathematics and quantitative thinking aimed to incorporate biology into the traditional quantitative cultures that have come to...

    Keywords: mathematicsquantitativemathQuantitative reasoningquantitative biologymathsintro mathintroductory mathintroductory mathematicsquantmath for biomath for biologymath forResources @ QUBES - Teaching & Reference

    1196

    views

    228

    downloads

    0

    comments

    0

    adaptations

    Adapting InTeGrate Materials for Online Courses
    As part of my second mentoring of the InTeGrate FMN for QUBES, I chose to focus on my conversion of several resources to an online course format.
    1169

    views

    447

    downloads

    0

    comments

    0

    adaptations

    How Many Salamanders are in the forest? Testing capture-recapture
    Collecting data on how populations respond to environmental change requires accurate estimates of population sizes. This activity explores one method for estimating population sizes across three...

    Keywords: salamanderCapture mark-recaptureAudience level - Introductory UG - majorsAudience level - Introductory UG - non-majors

    1989

    views

    899

    downloads

    0

    comments

    0

    adaptations

    Workshop Report: Summer 2020 Virtual CRISPR in the Classroom
    As innovations and developments in genome editing technologies using CRISPR-Cas systems progress, the need to disseminate relevant knowledge and build skills among the next generation of young...

    Keywords: geneticscrisprGenome Analysisgene editingbacterial immunity

    1403

    views

    183

    downloads

    0

    comments

    0

    adaptations

    Making Change Sustainable: Network for Integrating Bioinformatics into Life Sciences Education (NIBLSE) Meeting Review
    The purpose of the meeting described in this review was to decide how best to ensure the sustainability of the Network for Integrating Bioinformatics into Life Science Education (NIBLSE; pronounced...

    Keywords: meetingsustainabilityfmnNIBLSEincubator

    1758

    views

    108

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search