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    2020-Chen_Et_Al-MathModel_Simulation_Phase-Based_Transmissability_Corona_Virus
    In this study, we developed a Bats-Hosts-Reservoir-People transmission network model for simulating the potential transmission from the infection source (probably be bats) to the human infection.

    Keywords: basic reproduction numbercoronavirusnext generation matrixtransmissibilitynovel coronavirus

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    Exploring Primary Scientific Literature through the Lens of the 5 Core Concepts of Biology
    Biology students at the undergraduate level usually excel in knowing biological facts; however, they often struggle with connecting these facts to specific biological principles. In parallel,...

    Keywords: 5 core conceptsconnecting facts to principlesreading primary scientific literature

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    Using a Primary Cell Culture Model to Study the Neural Extracellular Matrix
    The extracellular matrix (ECM) provides structural support to cells, but also has key roles in mediating cell adhesion, cell signaling, and differentiation. While this topic is discussed in the...

    Keywords: Neural extracellular matrixPerineuronal netPrimary neuronal culture

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    Using Online Materials/Videos to Enrich Linear Algebra for Scientists
    Part of the 2015 SMB Minisymposium: Topics in Biomathematics Education

    Keywords: courselinear algebrabiology majors

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    REMNet: Introduction To Instructors 5.3.19
    Video on incorporating microbiome sequencing into biology education from the Research Experiences in Microbiomes Network

    Keywords: VideomicrobiomesREMNetmicrobiome sequencing

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    Sequence Similarity: An inquiry based and "under the hood" approach for incorporating molecular sequence alignment in introductory undergraduate biology courses
    Introductory bioinformatics exercises often walk students through the use of computational tools, but often provide little understanding of what a computational tool does "under the...

    Keywords: BLASTmultiple sequence alignmentsequence similarityphylogramZika virusAlgorithmScoring Matrix

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    Analysis of Microbiomes Using Free Web-Based Tools in Online and In-Person Undergraduate Science Courses
    Our understanding of microbiomes, or the collection of microorganisms and their genes in a given environment, has been revolutionized by technological and computational advances. However, many...

    Keywords: microbiomeDNA SubwayCyVerseCourse based undergraduate researchQIIME2ranacapa

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    Fantastic Birds and Where to Find Them
    5E lesson plan for middle/high school aligned to NGSS standards.

    Keywords: conservationspecies interactionsidigbionatural historyBiodiversityendangered species

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    Interactions between Water, Earth’s Surface, and Human Activity
    This two-week (~10-hour) module focuses on water and its importance to humans, both as a limited resource and in shaping Earth's surface.

    Keywords: earth scienceenvironmental sciencegeosciencewater resourcesResources @ InTeGrate

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    A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!
    This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.

    Keywords: data sciencebioinformaticsnext generation sequencingquality controlFASTQgenomicsprogrammingNIBLSElinuxmicrobiomeIllumina sequencingcommand lineFASTQEFASTPNGS analysisterminalMacemojiPhred scoreTrimmingshort read

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    Using Online Materials/Videos to Enrich Linear Algebra for Scientists
    Abstract for a talk given on an experiment using MIT’s open courseware linear algebra videos to teach a linear algebra course without prerequisites that targeted biology majors.

    Keywords: videoslinear algebraopen coursewareCamtasia

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    Using authentic scientific data to improve quantitative reasoning in ecology and evolutionary biology
    Presentation made by Louise Mead et al. as part of the "Bringing Research Data to the Ecology Classroom: Opportunities, Barriers, and Next Steps” Session at the Ecological Society of America...

    Keywords: Ecological Society of America

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    Evaluating the Quick Fix: Weight Loss Drugs and Cellular Respiration
    One key to student success in introductory and cell biology courses is a foundational knowledge of cellular respiration. This is a content area in which students often harbor misconceptions that...

    Keywords: data analysisCellular RespirationElectron Transport ChainEnergy transformationsMitochondriaOxidative phosphorylationWeight loss drugs24-dinitrophenol (DNP)

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    RESCUE-Net - Developing a Faculty Network in a Biodiversity Hotspot: the Research Experiences in Southern California For Undergraduate Ecologists Network (RCN-UBE Introduction)
    RESCUE-Net is a network of faculty in Southern California dedicated to mentoring undergraduates in conservation research so that they can become the next generation of ecological leaders.

    Keywords: RCN-UBE Introduction

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    Food, Energy and Water Learning Modules (FEWLM) Workbooks
    FEWLM is a low-cost inquiry-based interdisciplinary STEM prototypical curriculum built on Next Generation Science Standards, systems thinking and informed engineering design pedagogy.

    Keywords: K-12inquiry-based learningNext Generation Science StandardsSystem Thinking

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    An introduction to population matrix models: a swirl lesson
    Students will learn how to set up a population matrix model in R and use it for demographic analysis of a population, including projecting population growth, determining lambda and the stable age...

    Keywords: population dynamicsRpopulation growthonlinedemographypopulation projection modelquantitative biologypopulation modelmatrix modelspopulation ecologyage structurepopulation biologypopulation modelingSwirlDemographic processespopulationLeslie matrix

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    Data Cards Sample Created From Lost Crops of Africa (NRC, 1996, 2006, 2008)
    This resource provides a sample of the data cards that have been used in conference presentations, trainings, and science methods courses over the years. This resource provides supplemental data...

    Keywords: environmental scienceCurriculum developmentScience curriculumAfricacultural resourcescultural heritageancient fruitsancient vegetablesdiversity equity and inclusionBlackNext Generation Science StandardsBlack representation in STEMgrain sizescience capitalcrops

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    NSF Final Outcomes Report: Using the Lived Experiences and Narratives of Black Heritage and African American Gullah/Geechee to Learn Science Concepts
    This resource is a public report that provides final outcomes from the NSF funded project award # 1928832. The resources included in this report are outcomes from the catalyst project titled:...

    Keywords: biologyEquityenvironmental scienceScience curriculumdiversityinclusion#NGSSBlack representationbelongingusing lived experiences and narrativesBlack heritageGullah/Geechee

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    Teacher Guide: Math and Statistics
    Topics include measures of average (mean, median, and mode), variability (range and standard deviation), uncertainty (standard error and 95% confidence interval), Chi-square analysis, student...

    Keywords: Resources @ HHMI - BioInteractiveStatistics and Mathteacher guide

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    Going Remote: An Online Adaptation to Using a Primary Cell Culture Model to Study the Neural Extracellular Matrix
    In light of the COVID-19 pandemic, instructors have modified materials to transition to a remote learning platform. The challenge for science instructors has been to design lab exercises that...

    Keywords: remote learningExtracellular matrixNeural extracellular matrixPerineuronal net

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