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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Introduction to Plant Phenology with Museum Specimens of Desert Prickly Pear (Opuntia phaeacantha)
    Students engage in hands-on exploration of phenology by working with digitized herbarium specimens, particularly focusing on prickly pear specimens from the UTEP herbarium. They learn to identify...

    Keywords: botanyclimate changephenologyherbariumcactus

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    Scientific Literacy Re-visioned Workshop at NABT 2023
    This material was part of the “Scientific Literacy Re-visioned” presentation at the National Association of Biology Teachers (NABT) 2023 Conference in Baltimore MD. In this workshop participants...

    Keywords: Liberal Art of Science

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    Sounds of the Tropics: Part 2. How are frogs responding to hurricanes, droughts, and climate change?
    This online module explores the response of a tropical frog community to hurricanes, drought, and climate change. We use acoustic monitoring and occupancy modeling to understand how frog...

    Keywords: climate changefrogsspecies distributionsdroughtnatural disturbanceshurricanesPuerto Ricooccupancy modeling

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    2002-Faia-Differential Equation Modeling as a Source of Theoretical Insight-Four Disparate Examples
    We explore differential equations involving alcoholism, social mobility, excess female mortality, and international arms competition.

    Keywords: sociologyarms racesaccumulative advantagealcoholismPeter Principlefemale mortalitypopulation pressureoccupational mobilitysocial mobilityRichardson theory of war

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    2018-Robert_Phair-Differential_equation_methods_for_simulation_of_GFP_kinetics_in_non–steady_state_experiments
    Here, we derive new tracer kinetic analytical methods for non–steady state biological systems by constructing mechanistic nonlinear differential equation models of the underlying cell biological...

    Keywords: protein quality controlkineticsCellssteady statechemical kineticsfluouresencephotoactivationinytracellular

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    2011-Richard_Fitzpatrick-Newtonian_Dynamics
    This 300 page text is packed with motivational physics. Indeed, Professor Fitzpatrick brings us to the origins of why differential equations are the dominant tools of mathematics in the study of...

    Keywords: modelingtextbookphysicsbifurcation

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    Presentation related to the paper: Sustainability and Justice: Challenges and Opportunities for an Open STEM Education
    This is a presentation highlighting some issues at the intersection of STEM, Open, and Social Justice. The audience is STEM education professionals and professional developers. The presentation was...

    Keywords: cyberinfrastructurestemOERsocial justicelaboroer ecosystem

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    A Fun Introductory Command Line Lesson: Next Generation Sequencing Quality Analysis with Emoji!
    Radical innovations in DNA sequencing technology over the past decade have created an increased need for computational bioinformatics analyses in the 21st century STEM workforce. Recent...

    Keywords: bioinformaticsgenomicscodingJupyter notebookcommand lineCyVersescriptingnext generation sequencing analysis

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    Using genome browsers constructed by G-OnRamp to provide students with a Course-based Undergraduate Research Experience in genome annotation
    G-OnRamp (http://g-onramp.org) provides an easy-to-use web platform for educators to create genome browsers to engage undergraduate students in research projects, both collaborative annotation of...
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    Supersized Life: Comparing Across Scales
    How wide is the size range of living beings, from "big" to "too small to see"? Students will collect and compare measurements from 3D specimens within the metric system by multiplying or dividing...

    Keywords: paleontologyBiodiversitytechnology in biologynatural history collectionsmiddle grades (4-9)3D models3D printingWhole Numbers & Place ValueMIDDLE SCHOOL MATH#NGSSscientific measurementscale and proportions

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    MathBench: Biodiversity Assessment of Stream Biota
    The MathBench module, "The Case of the Missing Mountaintop" introduces students to the concept of biodiversity and measures used to quantify biodiversity and stream health. Students investigate the...

    Keywords: ecology labCommunity Ecologyenvironmental scienceconservation ecologyStream ecology

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    Towards better modelling and decision support: Documenting model development, testing, and analysis using TRACE
    We introduce TRACE, a framework for documenting model testing and analysis. TRACE is based on the recently proposed framework of model "evaluation" , and is designed to make models fit for...

    Keywords: standardizationgood modelling practicerisk assessmentdecision supportTRACEResources @ QUBES - Teaching & Reference

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    Biogeography of plant-associated fungi: who lives where and why?
    This dataset of fungal communities associated with the leaves an endemic Hawaiian tree provides students opportunities to explore relationships between environmental variables and microbial...

    Keywords: small group activityinquiry-based learningbiogeographymicrobial ecology

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    Globally endangered sea turtles of the Palmyra Atoll National Wildlife Refuge: A Focus on Scientific Analysis
    Based on the sea turtle case, students will (1) work on a worksheet by analyzing existing survey data, (2) conduct a literature review of two relevant research, and (3) draft a proposal for a...

    Keywords: sea turtle conservationliterature reviewResearch methodsProposal writingPalmyra Atoll

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    Incubators: A community based model for improving the usability of bioinformatics learning resources
    Poster on Incubators, a NIBLSE and QUBES collaboration presented at Great Lakes Bioinformatics Conference - Chicago, IL

    Keywords: NIBLSEincubators

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    Design, Implementation, and Evaluation of Faculty Mentoring Networks: A Model for Promoting Faculty Teaching Scholarship
    Presentation given as part of NABT Symposium discussing faculty mentoring networks and faculty teaching scholarship.

    Keywords: NABTFaculty Mentoring Network

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    Designing undergraduate biology curricula to teach skills and knowledge for data-intensive environmental research
    Poster presented at Ecological Society of America Annual Conference 2017.

    Keywords: data literacy

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    Enabling authentic ecological inquiries using research data and imageries in large classrooms
    Presentation made by Ben Wu et al. as part of the "Bringing Research Data to the Ecology Classroom: Opportunities, Barriers, and Next Steps” Session at the Ecological Society of America annual...

    Keywords: Ecological Society of America

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    Implementing an online module on microbe-plant interactions in the context of ecological disturbance for Microbiology and Biochemistry courses in India
    This module explores tropical forest gap dynamics and helps students develop hypotheses about climate-related changes in plant-microbial interactions and was implemented in Microbiology and...

    Keywords: data analysisscientific methoddata interpretationdisturbance ecologyexperiential learningCarbon sequestration in tropical rainforestPlant Microbial interactionsCanopy GapUndergraduate MicrobiologyNational Education Policy 2020

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    A "How-to" Guide For Producing Recorded Interviews
    Now that almost every student carries a camera in their pocket, student-created digital media items can be used to supplement curriculum material and as assessment. Although students can easily...

    Keywords: communicationemployabilitygathering data

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